Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MUM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C1 R N N 0 3.724 -1.305 1.11
2 C5M C C2 N N N 0 2.736 -2.346 1.64
3 C4 C C3 N N N 0 3.987 -1.56 -0.353
4 O4 O O1 N N N 0 4.94 -2.228 -0.69
5 N3 N N1 N N N 0 3.163 -1.044 -1.284
6 C6 C C4 N N N 0 3.129 0.095 1.278
7 N1 N N2 N N N 0 2.063 0.295 0.295
8 C2 C C5 N N N 0 2.154 -0.228 -0.938
9 O2 O O2 N N N 0 1.302 0.043 -1.762
10 C1' C C6 R N N 0 0.879 1.077 0.662
11 O4' O O3 N N N 0 -0.323 0.321 0.402
12 C4' C C7 R N N 0 -1.379 1.303 0.315
13 C3' C C8 S N N 0 -0.758 2.48 -0.47
14 O3' O O4 N N N 0 -1.222 3.728 0.049
15 C2' C C9 R N N 0 0.761 2.328 -0.236
16 O2' O O5 N N N 0 1.283 3.477 0.434
17 C5' C C10 N N N 0 -2.578 0.731 -0.443
18 O5' O O6 N N N 0 -3.162 -0.327 0.319
19 P P P1 N N N 0 -4.448 -1.159 -0.177
20 O2P O O7 N N N 0 -3.769 -2.366 -0.999
21 O1P O O8 N N N 0 -4.913 -1.896 1.176
22 H1 H H1 N N N 0 4.659 -1.373 1.666
23 H2 H H2 N N N 0 3.157 -3.344 1.516
24 H3 H H3 N N N 0 2.546 -2.161 2.697
25 H4 H H4 N N N 0 1.8 -2.275 1.085
26 H5 H H5 N N N 0 3.301 -1.265 -2.218
27 H6 H H6 N N N 0 2.721 0.199 2.283
28 H7 H H7 N N N 0 3.909 0.841 1.124
29 H8 H H8 N N N 0 0.927 1.365 1.712
30 H9 H H9 N N N 0 -1.678 1.628 1.311
31 H10 H H10 N N N 0 -0.994 2.398 -1.531
32 H11 H H11 N N N 0 -0.864 4.502 -0.407
33 H12 H H12 N N N 0 1.281 2.17 -1.181
34 H13 H H13 N N N 0 1.233 4.292 -0.085
35 H14 H H14 N N N 0 -3.317 1.516 -0.6
36 H15 H H15 N N N 0 -2.247 0.344 -1.407
37 H16 H H16 N N N 0 -4.404 -2.986 -1.383
38 H17 H H17 N N N 0 -5.694 -2.457 1.071