Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MUM    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4 C4 O C doub 1.21 N N
2 C5M C5 C C sing 1.53 N N
3 C5 C4 C C sing 1.51 N N
4 C5 C6 C C sing 1.53 N N
5 C4 N3 C N sing 1.35 N N
6 N3 C2 N C sing 1.34 N N
7 C6 N1 C N sing 1.46 N N
8 C2 N1 C N sing 1.34 N N
9 C2 O2 C O doub 1.22 N N
10 N1 C1' N C sing 1.47 N N
11 C1' O4' C O sing 1.44 N N
12 C1' C2' C C sing 1.54 N N
13 O4' C4' O C sing 1.44 N N
14 C2' O2' C O sing 1.43 N N
15 C2' C3' C C sing 1.54 N N
16 C4' C3' C C sing 1.55 N N
17 C4' C5' C C sing 1.53 N N
18 C3' O3' C O sing 1.43 N N
19 O5' C5' O C sing 1.43 N N
20 O5' P O P sing 1.61 N N
21 O2P P O P sing 1.61 N N
22 P O1P P O sing 1.61 N N
23 C5 H1 C H sing 1.09 N N
24 C5M H2 C H sing 1.09 N N
25 C5M H3 C H sing 1.09 N N
26 C5M H4 C H sing 1.09 N N
27 N3 H5 N H sing 0.97 N N
28 C6 H6 C H sing 1.09 N N
29 C6 H7 C H sing 1.09 N N
30 C1' H8 C H sing 1.09 N N
31 C4' H9 C H sing 1.09 N N
32 C3' H10 C H sing 1.09 N N
33 O3' H11 O H sing 0.97 N N
34 C2' H12 C H sing 1.09 N N
35 O2' H13 O H sing 0.97 N N
36 C5' H14 C H sing 1.09 N N
37 C5' H15 C H sing 1.09 N N
38 O2P H16 O H sing 0.97 N N
39 O1P H17 O H sing 0.97 N N