Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MZP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -4.639 1.07 -0.109
2 O1P O O1P N N N 0 -5.6 -0.092 0.315
3 O2P O O2P N N N -1 -4.279 1.934 1.147
4 O3P O O3P N N N -1 -5.35 1.971 -1.176
5 O5' O O5* N N N 0 -3.293 0.452 -0.739
6 C5' C C5* N N N 0 -2.757 -0.447 0.234
7 C4' C C4* R N N 0 -1.469 -1.073 -0.305
8 O4' O O4* N N N 0 -0.442 -0.068 -0.445
9 C3' C C3* S N N 0 -0.895 -2.086 0.71
10 O3' O O3* N N N 0 -1.267 -3.419 0.353
11 C2' C C2* R N N 0 0.637 -1.902 0.599
12 O2' O O2* N N N 0 1.258 -3.117 0.173
13 C1' C C1* R N N 0 0.804 -0.797 -0.468
14 N1 N N1 N Y N 0 1.919 0.086 -0.117
15 C2 C C2 N Y N 0 1.831 1.253 0.582
16 O6 O O6 N N N 0 6.08 0.388 -0.567
17 N3 N N3 N Y N 1 3.016 1.772 0.708
18 C4 C C4 N Y N 0 3.925 0.964 0.097
19 C6 C C6 N N N 0 5.371 1.191 0.011
20 C5 C C5 N Y N 0 3.229 -0.108 -0.434
21 N6 N N6 N N N 0 5.916 2.288 0.573
22 O5 O O5 N N N -1 3.75 -1.149 -1.126
23 H5'1 H 1H5* N N N 0 -3.484 -1.233 0.442
24 H5'2 H 2H5* N N N 0 -2.539 0.098 1.152
25 H4'C H CH4* N N N 0 -1.656 -1.56 -1.262
26 H3'C H CH3* N N N 0 -1.237 -1.852 1.718
27 H3'O H OH3* N N N 0 -0.882 -4.004 1.02
28 H2'C H CH2* N N N 0 1.053 -1.576 1.553
29 H2'O H OH2* N N N 0 1.067 -3.781 0.85
30 H1'C H CH1* N N N 0 0.967 -1.24 -1.45
31 HC2 H HC2 N N N 0 0.919 1.68 0.971
32 HN3 H HN3 N N N 0 3.221 2.602 1.165
33 HN61 H 1HN6 N N N 0 6.872 2.438 0.517
34 HN62 H 2HN6 N N N 0 5.35 2.93 1.031