Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MZP    

Bonds between two atoms of the molecule

Total Number of Bonds: 35


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O doub 1.57 N N
2 P O2P P O sing 1.57 N N
3 P O3P P O sing 1.57 N N
4 P O5' P O sing 1.61 N N
5 O5' C5' O C sing 1.43 N N
6 C5' C4' C C sing 1.53 N N
7 C5' H5'1 C H sing 1.09 N N
8 C5' H5'2 C H sing 1.09 N N
9 C4' O4' C O sing 1.44 N N
10 C4' C3' C C sing 1.54 N N
11 C4' H4'C C H sing 1.09 N N
12 O4' C1' O C sing 1.44 N N
13 C3' O3' C O sing 1.43 N N
14 C3' C2' C C sing 1.55 N N
15 C3' H3'C C H sing 1.09 N N
16 O3' H3'O O H sing 0.97 N N
17 C2' O2' C O sing 1.43 N N
18 C2' C1' C C sing 1.55 N N
19 C2' H2'C C H sing 1.09 N N
20 O2' H2'O O H sing 0.97 N N
21 C1' N1 C N sing 1.46 N N
22 C1' H1'C C H sing 1.09 N N
23 N1 C2 N C sing 1.36 N Y
24 N1 C5 N C sing 1.36 N Y
25 C2 N3 C N doub 1.3 N Y
26 C2 HC2 C H sing 1.08 N N
27 N3 C4 N C sing 1.36 N Y
28 N3 HN3 N H sing 0.97 N N
29 C4 C6 C C sing 1.47 N N
30 C4 C5 C C doub 1.38 N Y
31 C6 O6 C O doub 1.22 N N
32 C6 N6 C N sing 1.35 N N
33 C5 O5 C O sing 1.35 N N
34 N6 HN61 N H sing 0.97 N N
35 N6 HN62 N H sing 0.97 N N