Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : N5N

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 1.451 -2.14 -0.544
2 C2 C C2 N N N 0 2.361 -3.092 -1.185
3 C3 C C3 N N N 0 1.332 -0.889 -1.031
4 C4 C C4 N N N 0 0.665 -2.549 0.622
5 C5 C C5 N N N 0 3.495 -3.668 -0.335
6 C6 C C6 N N N 0 2.304 -4.548 -0.718
7 C7 C C7 S N N 0 0.396 0.091 -0.372
8 O8 O O8 N N N 0 1.979 -0.552 -2.0
9 C9 C C9 N N N 0 1.445 -2.263 1.879
10 N10 N N10 N N N 0 0.776 1.456 -0.744
11 C11 C C11 N N N 0 -1.037 -0.184 -0.833
12 O12 O O12 N N N 0 0.919 -2.558 3.078
13 O13 O O13 N N N 0 2.545 -1.768 1.808
14 S14 S S14 N N N 0 1.765 2.339 0.247
15 C15 C C15 N N N 0 -1.987 0.714 -0.083
16 C16 C C16 N Y N 0 3.33 1.531 0.278
17 O17 O O17 N N N 0 1.971 3.587 -0.4
18 O18 O O18 N N N 0 1.228 2.223 1.557
19 N19 N N19 N N N 0 -3.311 0.647 -0.326
20 O20 O O20 N N N 0 -1.56 1.496 0.741
21 C21 C C21 N Y N 0 4.278 1.87 -0.639
22 C22 C C22 N Y N 0 3.581 0.558 1.243
23 C23 C C23 N N N 0 -4.234 1.52 0.404
24 C24 C C24 N Y N 0 5.528 1.227 -0.617
25 C25 C C25 N Y N 0 4.78 -0.086 1.294
26 C26 C C26 S N N 0 -5.667 1.245 -0.057
27 C27 C C27 N Y N 0 5.781 0.234 0.362
28 C28 C C28 N Y N 0 6.531 1.55 -1.547
29 C29 C C29 N N N 0 -6.065 -0.182 0.332
30 C30 C C30 N N N 0 -6.619 2.237 0.615
31 C31 C C31 N Y N 0 7.03 -0.41 0.383
32 C32 C C32 N Y N 0 7.729 0.906 -1.495
33 N33 N N33 N N N 0 -7.482 -0.385 0.0
34 C34 C C34 N N N 0 -8.048 1.985 0.13
35 C35 C C35 N Y N 0 7.978 -0.071 -0.533
36 C36 C C36 N N N 0 -8.473 0.567 0.521
37 C37 C C37 N N N 0 -7.872 -1.444 -0.784
38 N38 N N38 N N N 0 -9.209 -1.688 -0.994
39 N39 N N39 N N N 0 -6.975 -2.218 -1.328
40 H2 H H2 N N N 0 2.565 -2.91 -2.24
41 H41C H H41C N N N 0 -0.273 -1.994 0.642
42 H42C H H42C N N N 0 0.453 -3.617 0.561
43 H51C H H51C N N N 0 4.446 -3.864 -0.83
44 H52C H H52C N N N 0 3.564 -3.337 0.702
45 H61C H H61C N N N 0 1.589 -4.797 0.067
46 H62C H H62C N N N 0 2.471 -5.324 -1.465
47 H7 H H7 N N N 0 0.457 -0.021 0.711
48 H10 H H10 N N N 0 0.449 1.842 -1.572
49 H111 H H111 N N N 0 -1.118 0.014 -1.902
50 H112 H H112 N N N 0 -1.289 -1.225 -0.636
51 H12 H H12 N N N 0 1.457 -2.356 3.856
52 H19 H H19 N N N 0 -3.652 0.022 -0.984
53 H21 H H21 N N N 0 4.071 2.628 -1.379
54 H22 H H22 N N N 0 2.814 0.311 1.961
55 H231 H H231 N N N 0 -4.152 1.322 1.473
56 H232 H H232 N N N 0 -3.982 2.562 0.207
57 H25 H H25 N N N 0 4.96 -0.837 2.049
58 H26 H H26 N N N 0 -5.728 1.358 -1.139
59 H28 H H28 N N N 0 6.352 2.305 -2.298
60 H291 H H291 N N N 0 -5.454 -0.895 -0.221
61 H292 H H292 N N N 0 -5.917 -0.323 1.403
62 H301 H H301 N N N 0 -6.574 2.107 1.697
63 H302 H H302 N N N 0 -6.322 3.255 0.36
64 H31 H H31 N N N 0 7.238 -1.168 1.123
65 H32 H H32 N N N 0 8.498 1.156 -2.211
66 H341 H H341 N N N 0 -8.722 2.707 0.591
67 H342 H H342 N N N 0 -8.087 2.091 -0.955
68 H35 H H35 N N N 0 8.937 -0.566 -0.514
69 H361 H H361 N N N 0 -9.451 0.347 0.092
70 H362 H H362 N N N 0 -8.521 0.486 1.607
71 H381 H H381 N N N 0 -9.874 -1.072 -0.65
72 H382 H H382 N N N 0 -9.487 -2.476 -1.487
73 H39 H H39 N N N 0 -7.251 -2.966 -1.881