Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OG2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.452 -0.484 0.042
2 N1 N N1 N N N 0 0.936 -0.947 0.096
3 C2 C C2 N N N 0 -0.768 0.326 1.302
4 N2 N N2 N N N 0 3.269 -0.476 0.01
5 C3 C C3 N N N 0 -2.219 0.81 1.246
6 C4 C C4 N N N 0 -3.157 -0.396 1.166
7 C5 C C5 N N N 0 -2.84 -1.205 -0.094
8 C6 C C6 N N N 0 -1.39 -1.69 -0.038
9 C7 C C7 N N N 0 -3.036 -0.324 -1.329
10 C8 C C8 N N N 0 -2.098 0.883 -1.249
11 C9 C C9 N N N 0 -0.648 0.398 -1.193
12 C10 C C10 N N N 0 -2.414 1.692 0.011
13 N N N3 N N N 0 1.709 1.24 0.072
14 C C C11 N N N 0 1.967 -0.038 0.06
15 C11 C C12 N N N 0 4.367 0.493 -0.028
16 C12 C C13 N N N 0 5.703 -0.252 -0.079
17 H1 H H1 N N N 0 1.129 -1.896 0.157
18 H2 H H2 N N N 0 -0.629 -0.303 2.182
19 H3 H H3 N N N 0 -0.1 1.185 1.359
20 H4 H H4 N N N 0 3.461 -1.427 0.002
21 H5 H H5 N N N 0 -2.444 1.387 2.143
22 H6 H H6 N N N 0 -3.017 -1.024 2.045
23 H7 H H7 N N N 0 -4.19 -0.051 1.126
24 H8 H H8 N N N 0 -3.509 -2.064 -0.151
25 H9 H H9 N N N 0 -1.165 -2.266 -0.935
26 H10 H H10 N N N 0 -1.25 -2.318 0.842
27 H11 H H11 N N N 0 -2.811 -0.9 -2.226
28 H12 H H12 N N N 0 -4.069 0.022 -1.369
29 H13 H H13 N N N 0 -2.238 1.511 -2.128
30 H14 H H14 N N N 0 0.02 1.257 -1.135
31 H15 H H15 N N N 0 -0.423 -0.178 -2.09
32 H16 H H16 N N N 0 -3.448 2.037 -0.029
33 H17 H H17 N N N 0 -1.746 2.551 0.068
34 H18 H H18 N N N 0 0.796 1.549 0.178
35 H19 H H19 N N N 0 4.267 1.12 -0.914
36 H20 H H20 N N N 0 4.333 1.117 0.865
37 H21 H H21 N N N 0 5.803 -0.879 0.807
38 H23 H H23 N N N 0 6.52 0.469 -0.108
39 H22 H H22 N N N 0 5.737 -0.876 -0.972