Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : OLD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 4.604 -1.347 1.108
2 CA C CA S N N 0 3.403 -1.397 0.265
3 CB C CB N N N 0 3.601 -0.501 -0.959
4 CG C CG N Y N 0 3.718 0.935 -0.517
5 CD2 C CD2 N Y N 0 4.838 1.56 -0.108
6 ND1 N ND1 N Y N 0 2.707 1.856 -0.459
7 CE1 C CE1 N Y N 0 3.244 3.011 -0.011
8 NE2 N NE2 N Y N 0 4.519 2.827 0.197
9 CH C CH N N N 0 1.304 1.63 -0.817
10 CG1 C CG1 N Y N 0 -0.86 0.729 0.258
11 CD1 C CD1 N Y N 0 -1.544 0.961 -0.94
12 CE3 C CE3 N Y N 0 -2.885 0.655 -1.034
13 CD3 C CD3 N Y N 0 -1.543 0.188 1.352
14 CE2 C CE2 N Y N 0 -2.885 -0.108 1.245
15 CZ C CZ N Y N 0 -3.555 0.119 0.054
16 BR BR BR N N N 0 -5.394 -0.297 -0.086
17 C9 C C9 N N N 0 0.572 1.048 0.364
18 O2 O O2 N N N 0 1.164 0.841 1.402
19 C C C N N N 0 3.163 -2.816 -0.185
20 O O O N N N 0 4.067 -3.618 -0.16
21 OXT O OXT N N Y 0 1.947 -3.188 -0.613
22 HN H HN N N N 0 4.474 -1.88 1.955
23 HNA H HNA N N Y 0 5.416 -1.667 0.601
24 HA H HA N N N 0 2.543 -1.047 0.836
25 HB H HB N N N 0 4.511 -0.795 -1.482
26 HBA H HBA N N N 0 2.748 -0.606 -1.629
27 HD2 H HD2 N N N 0 5.822 1.119 -0.037
28 HE1 H HE1 N N N 0 2.708 3.935 0.146
29 HH H HH N N N 0 0.844 2.578 -1.098
30 HHA H HHA N N N 0 1.25 0.937 -1.656
31 HD1 H HD1 N N N 0 -1.024 1.379 -1.789
32 HE3 H HE3 N N N 0 -3.415 0.834 -1.958
33 HD3 H HD3 N N N 0 -1.02 0.002 2.278
34 HOXT H HOXT N N Y 0 1.842 -4.108 -0.891
35 HE2 H HE2 N N N 0 -3.414 -0.525 2.089