Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PNF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.997 -0.011 -5.138
2 C2 C C2 N Y N 0 0.646 1.199 -5.733
3 C3 C C3 N Y N 0 -0.052 1.21 -6.904
4 C4 C C4 N Y N 0 -0.42 -0.005 -7.512
5 C5 C C5 N Y N 0 -0.062 -1.224 -6.904
6 C6 C C6 N Y N 0 0.641 -1.218 -5.736
7 P1 P P1 R N N 0 0.608 -0.009 -2.785
8 O1 O O1 N N N 0 1.692 -0.013 -3.975
9 O2 O O2 N N N 0 -0.308 1.309 -2.899
10 O3 O O3 N N N 0 -0.244 -1.214 -2.89
11 C8 C C8 N N N 0 1.469 -0.012 -1.178
12 C9 C C9 N N N 0 0.439 -0.008 -0.047
13 C10 C C10 N N N 0 1.162 -0.011 1.3
14 C11 C C11 N N N 0 0.148 -0.007 2.414
15 N2 N N2 N N N 0 0.557 -0.009 3.698
16 O6 O O6 N N N 0 -1.036 -0.002 2.155
17 C12 C C12 N N N 0 -0.429 -0.004 4.782
18 C13 C C13 N N N 0 0.293 -0.007 6.13
19 C14 C C14 N N N 0 -0.736 -0.003 7.261
20 C15 C C15 N N N 0 -0.013 -0.006 8.609
21 C16 C C16 N N N 0 -1.043 -0.002 9.741
22 C17 C C17 N N N 0 -0.331 -0.005 11.069
23 O7 O O7 N N N 0 0.876 -0.01 11.107
24 O8 O O8 N N N 0 -1.038 -0.002 12.21
25 N1 N N1 N N N 1 -1.108 -0.002 -8.662
26 O4 O O4 N N N 0 -1.425 -1.055 -9.185
27 O5 O O5 N N N -1 -1.417 1.053 -9.185
28 H21 H 1H2 N N N 0 0.929 2.131 -5.266
29 H31 H 1H3 N N N 0 -0.324 2.149 -7.364
30 H51 H 1H5 N N N 0 -0.341 -2.16 -7.364
31 H61 H 1H6 N N N 0 0.916 -2.152 -5.269
32 HO21 H 1HO2 N N N 0 0.284 2.069 -2.826
33 H81 H 1H8 N N N 0 2.098 0.874 -1.101
34 H82 H 2H8 N N N 0 2.09 -0.905 -1.101
35 H91 H 1H9 N N N 0 -0.188 -0.896 -0.125
36 H92 H 2H9 N N N 0 -0.181 0.884 -0.125
37 H101 H 1H10 N N N 0 1.791 0.875 1.377
38 H102 H 2H10 N N N 0 1.783 -0.904 1.378
39 HN21 H 1HN2 N N N 0 1.504 -0.013 3.906
40 H121 H 1H12 N N N 0 -1.057 -0.892 4.704
41 H122 H 2H12 N N N 0 -1.05 0.887 4.704
42 H131 H 1H13 N N N 0 0.922 0.879 6.207
43 H132 H 2H13 N N N 0 0.914 -0.9 6.207
44 H141 H 1H14 N N N 0 -1.364 -0.89 7.184
45 H142 H 2H14 N N N 0 -1.357 0.889 7.184
46 H151 H 1H15 N N N 0 0.615 0.88 8.687
47 H152 H 2H15 N N N 0 0.607 -0.899 8.687
48 H161 H 1H16 N N N 0 -1.671 -0.889 9.663
49 H162 H 2H16 N N N 0 -1.664 0.89 9.663
50 HO81 H 1HO8 N N N 0 -0.581 -0.004 13.062