Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PNF    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.39 N Y
2 C1 C6 C C sing 1.39 N Y
3 C1 O1 C O sing 1.35 N N
4 C2 C3 C C sing 1.36 N Y
5 C2 H21 C H sing 1.08 N N
6 C3 C4 C C doub 1.41 N Y
7 C3 H31 C H sing 1.08 N N
8 C4 C5 C C sing 1.41 N Y
9 C4 N1 C N sing 1.34 N N
10 C5 C6 C C doub 1.36 N Y
11 C5 H51 C H sing 1.08 N N
12 C6 H61 C H sing 1.08 N N
13 P1 O1 P O sing 1.61 N N
14 P1 O2 P O sing 1.61 N N
15 P1 O3 P O doub 1.48 N N
16 P1 C8 P C sing 1.82 N N
17 O2 HO21 O H sing 0.97 N N
18 C8 C9 C C sing 1.53 N N
19 C8 H81 C H sing 1.09 N N
20 C8 H82 C H sing 1.09 N N
21 C9 C10 C C sing 1.53 N N
22 C9 H91 C H sing 1.09 N N
23 C9 H92 C H sing 1.09 N N
24 C10 C11 C C sing 1.51 N N
25 C10 H101 C H sing 1.09 N N
26 C10 H102 C H sing 1.09 N N
27 C11 N2 C N sing 1.35 N N
28 C11 O6 C O doub 1.21 N N
29 N2 C12 N C sing 1.47 N N
30 N2 HN21 N H sing 0.97 N N
31 C12 C13 C C sing 1.53 N N
32 C12 H121 C H sing 1.09 N N
33 C12 H122 C H sing 1.09 N N
34 C13 C14 C C sing 1.53 N N
35 C13 H131 C H sing 1.09 N N
36 C13 H132 C H sing 1.09 N N
37 C14 C15 C C sing 1.53 N N
38 C14 H141 C H sing 1.09 N N
39 C14 H142 C H sing 1.09 N N
40 C15 C16 C C sing 1.53 N N
41 C15 H151 C H sing 1.09 N N
42 C15 H152 C H sing 1.09 N N
43 C16 C17 C C sing 1.51 N N
44 C16 H161 C H sing 1.09 N N
45 C16 H162 C H sing 1.09 N N
46 C17 O7 C O doub 1.21 N N
47 C17 O8 C O sing 1.34 N N
48 O8 HO81 O H sing 0.97 N N
49 N1 O4 N O doub 1.22 N N
50 N1 O5 N O sing 1.22 N N