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PDBeChem : Atoms of Molecule
Molecule : PO1
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 58
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C1 |
C |
C1 |
N |
Y |
N |
0 |
4.192 |
-0.266 |
0.586 |
2 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
3.52 |
0.909 |
0.908 |
3 |
O2 |
O |
O2 |
N |
N |
N |
0 |
4.815 |
-0.615 |
-1.765 |
4 |
S1 |
S |
S1 |
N |
N |
N |
0 |
5.827 |
0.052 |
-1.023 |
5 |
O1 |
O |
O1 |
N |
N |
N |
0 |
7.226 |
-0.128 |
-1.193 |
6 |
N1 |
N |
N1 |
N |
N |
N |
0 |
5.552 |
1.67 |
-1.241 |
7 |
O3 |
O |
O3 |
N |
N |
N |
0 |
5.544 |
-0.265 |
0.439 |
8 |
C3 |
C |
C3 |
N |
Y |
N |
0 |
2.144 |
0.892 |
1.048 |
9 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
1.431 |
-0.286 |
0.872 |
10 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
2.096 |
-1.452 |
0.55 |
11 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
3.477 |
-1.429 |
0.404 |
12 |
O4 |
O |
O4 |
N |
N |
N |
0 |
4.211 |
2.068 |
1.08 |
13 |
C7 |
C |
C7 |
N |
N |
N |
0 |
3.25 |
3.079 |
1.392 |
14 |
C8 |
C |
C8 |
S |
N |
N |
0 |
-0.059 |
-0.247 |
1.051 |
15 |
C12 |
C |
C12 |
N |
N |
N |
0 |
-0.657 |
1.063 |
0.559 |
16 |
C9 |
C |
C9 |
S |
N |
N |
0 |
-0.71 |
-1.444 |
0.345 |
17 |
C10 |
C |
C10 |
N |
N |
N |
0 |
-0.032 |
-2.716 |
0.854 |
18 |
C11 |
C |
C11 |
N |
N |
N |
0 |
1.392 |
-2.752 |
0.301 |
19 |
C14 |
C |
C14 |
S |
N |
N |
0 |
-2.75 |
-0.128 |
0.027 |
20 |
C13 |
C |
C13 |
N |
N |
N |
0 |
-2.185 |
1.071 |
0.759 |
21 |
C15 |
C |
C15 |
S |
N |
N |
0 |
-2.185 |
-1.412 |
0.696 |
22 |
C16 |
C |
C16 |
N |
N |
N |
0 |
-2.322 |
-0.083 |
-1.441 |
23 |
C17 |
C |
C17 |
S |
N |
N |
0 |
-4.258 |
-0.339 |
0.114 |
24 |
C18 |
C |
C18 |
N |
N |
N |
0 |
-4.46 |
-1.874 |
0.07 |
25 |
C19 |
C |
C19 |
N |
N |
N |
0 |
-3.039 |
-2.502 |
0.047 |
26 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-4.909 |
0.281 |
-0.998 |
27 |
S2 |
S |
S2 |
N |
N |
N |
0 |
-6.24 |
0.813 |
-0.487 |
28 |
O6 |
O |
O6 |
N |
N |
N |
0 |
-6.712 |
-0.154 |
0.441 |
29 |
O7 |
O |
O7 |
N |
N |
N |
0 |
-6.944 |
1.261 |
-1.638 |
30 |
N2 |
N |
N2 |
N |
N |
N |
0 |
-5.921 |
2.172 |
0.403 |
31 |
HN11 |
H |
1HN1 |
N |
N |
N |
0 |
5.264 |
2.218 |
-0.494 |
32 |
HN12 |
H |
2HN1 |
N |
N |
N |
0 |
5.678 |
2.07 |
-2.116 |
33 |
H3 |
H |
H3 |
N |
N |
N |
0 |
1.62 |
1.803 |
1.296 |
34 |
H6 |
H |
H6 |
N |
N |
N |
0 |
4.0 |
-2.332 |
0.128 |
35 |
H71 |
H |
1H7 |
N |
N |
N |
0 |
3.76 |
4.031 |
1.539 |
36 |
H72 |
H |
2H7 |
N |
N |
N |
0 |
2.539 |
3.17 |
0.571 |
37 |
H73 |
H |
3H7 |
N |
N |
N |
0 |
2.719 |
2.806 |
2.304 |
38 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-0.27 |
-0.333 |
2.117 |
39 |
H9 |
H |
H9 |
N |
N |
N |
0 |
-0.583 |
-1.363 |
-0.735 |
40 |
H101 |
H |
1H10 |
N |
N |
N |
0 |
-0.003 |
-2.707 |
1.943 |
41 |
H102 |
H |
2H10 |
N |
N |
N |
0 |
-0.583 |
-3.59 |
0.507 |
42 |
H111 |
H |
1H11 |
N |
N |
N |
0 |
1.95 |
-3.544 |
0.802 |
43 |
H112 |
H |
2H11 |
N |
N |
N |
0 |
1.355 |
-2.964 |
-0.768 |
44 |
H121 |
H |
1H12 |
N |
N |
N |
0 |
-0.217 |
1.89 |
1.116 |
45 |
H122 |
H |
2H12 |
N |
N |
N |
0 |
-0.433 |
1.185 |
-0.501 |
46 |
H131 |
H |
1H13 |
N |
N |
N |
0 |
-2.419 |
1.0 |
1.821 |
47 |
H132 |
H |
2H13 |
N |
N |
N |
0 |
-2.607 |
1.988 |
0.348 |
48 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-2.34 |
-1.397 |
1.775 |
49 |
H161 |
H |
1H16 |
N |
N |
N |
0 |
-1.237 |
0.006 |
-1.5 |
50 |
H162 |
H |
2H16 |
N |
N |
N |
0 |
-2.639 |
-0.999 |
-1.94 |
51 |
H163 |
H |
3H16 |
N |
N |
N |
0 |
-2.784 |
0.775 |
-1.928 |
52 |
H17 |
H |
H17 |
N |
N |
N |
0 |
-4.643 |
0.066 |
1.05 |
53 |
H181 |
H |
1H18 |
N |
N |
N |
0 |
-5.002 |
-2.206 |
0.955 |
54 |
H182 |
H |
2H18 |
N |
N |
N |
0 |
-5.007 |
-2.154 |
-0.831 |
55 |
H191 |
H |
1H19 |
N |
N |
N |
0 |
-3.012 |
-3.415 |
0.643 |
56 |
H192 |
H |
2H19 |
N |
N |
N |
0 |
-2.72 |
-2.698 |
-0.976 |
57 |
HN21 |
H |
1HN2 |
N |
N |
N |
0 |
-5.007 |
2.479 |
0.51 |
58 |
HN22 |
H |
2HN2 |
N |
N |
N |
0 |
-6.649 |
2.662 |
0.817 |
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