Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PO1    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.39 N Y
2 C1 O3 C O sing 1.36 N N
3 C1 C6 C C doub 1.38 N Y
4 C2 C3 C C doub 1.38 N Y
5 C2 O4 C O sing 1.36 N N
6 O2 S1 O S doub 1.42 N N
7 S1 O1 S O doub 1.42 N N
8 S1 N1 S N sing 1.66 N N
9 S1 O3 S O sing 1.52 N N
10 N1 HN11 N H sing 0.97 N N
11 N1 HN12 N H sing 0.97 N N
12 C3 C4 C C sing 1.39 N Y
13 C3 H3 C H sing 1.08 N N
14 C4 C5 C C doub 1.38 N Y
15 C4 C8 C C sing 1.5 N N
16 C5 C6 C C sing 1.39 N Y
17 C5 C11 C C sing 1.5 N N
18 C6 H6 C H sing 1.08 N N
19 O4 C7 O C sing 1.43 N N
20 C7 H71 C H sing 1.09 N N
21 C7 H72 C H sing 1.09 N N
22 C7 H73 C H sing 1.09 N N
23 C8 C9 C C sing 1.53 N N
24 C8 C12 C C sing 1.52 N N
25 C8 H8 C H sing 1.09 N N
26 C9 C10 C C sing 1.53 N N
27 C9 C15 C C sing 1.52 N N
28 C9 H9 C H sing 1.09 N N
29 C10 C11 C C sing 1.53 N N
30 C10 H101 C H sing 1.09 N N
31 C10 H102 C H sing 1.09 N N
32 C11 H111 C H sing 1.09 N N
33 C11 H112 C H sing 1.09 N N
34 C12 C13 C C sing 1.54 N N
35 C12 H121 C H sing 1.09 N N
36 C12 H122 C H sing 1.09 N N
37 C13 C14 C C sing 1.51 N N
38 C13 H131 C H sing 1.09 N N
39 C13 H132 C H sing 1.09 N N
40 C14 C15 C C sing 1.55 N N
41 C14 C16 C C sing 1.53 N N
42 C14 C17 C C sing 1.53 N N
43 C15 C19 C C sing 1.53 N N
44 C15 H15 C H sing 1.09 N N
45 C16 H161 C H sing 1.09 N N
46 C16 H162 C H sing 1.09 N N
47 C16 H163 C H sing 1.09 N N
48 C17 C18 C C sing 1.55 N N
49 C17 O5 C O sing 1.43 N N
50 C17 H17 C H sing 1.09 N N
51 C18 C19 C C sing 1.55 N N
52 C18 H181 C H sing 1.09 N N
53 C18 H182 C H sing 1.09 N N
54 C19 H191 C H sing 1.09 N N
55 C19 H192 C H sing 1.09 N N
56 O5 S2 O S sing 1.52 N N
57 S2 O6 S O doub 1.42 N N
58 S2 O7 S O doub 1.42 N N
59 S2 N2 S N sing 1.66 N N
60 N2 HN21 N H sing 0.97 N N
61 N2 HN22 N H sing 0.97 N N