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PDBeChem : Atoms of Molecule
Molecule : PRD
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 45
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C4A |
C |
C4A |
N |
Y |
N |
0 |
-0.16 |
-0.428 |
-2.917 |
2 |
C8A |
C |
C8A |
N |
Y |
N |
0 |
-0.475 |
0.95 |
-2.848 |
3 |
N1' |
N |
N1* |
N |
Y |
N |
0 |
-0.252 |
1.712 |
-3.929 |
4 |
N8' |
N |
N8* |
N |
Y |
N |
0 |
-0.979 |
1.463 |
-1.725 |
5 |
C7B |
C |
C7* |
N |
Y |
N |
0 |
-1.197 |
0.716 |
-0.667 |
6 |
C5B |
C |
C5* |
N |
Y |
N |
0 |
-0.379 |
-1.24 |
-1.798 |
7 |
C6B |
C |
C6* |
N |
Y |
N |
0 |
-0.911 |
-0.65 |
-0.663 |
8 |
N6' |
N |
N6* |
R |
N |
N |
0 |
-1.154 |
-1.417 |
0.481 |
9 |
C61 |
C |
C61 |
N |
N |
N |
0 |
-0.852 |
-2.85 |
0.48 |
10 |
C4B |
C |
C4* |
N |
Y |
N |
0 |
0.375 |
-0.941 |
-4.124 |
11 |
N4' |
N |
N4* |
N |
N |
N |
0 |
0.698 |
-2.276 |
-4.243 |
12 |
N3' |
N |
N3* |
N |
Y |
N |
0 |
0.557 |
-0.104 |
-5.136 |
13 |
C2B |
C |
C2* |
N |
Y |
N |
0 |
0.248 |
1.184 |
-5.03 |
14 |
N2' |
N |
N2* |
N |
N |
N |
0 |
0.462 |
2.007 |
-6.12 |
15 |
C7' |
C |
C7' |
N |
N |
N |
0 |
-1.71 |
-0.786 |
1.681 |
16 |
C1' |
C |
C1' |
N |
Y |
N |
0 |
-0.587 |
-0.294 |
2.556 |
17 |
C2' |
C |
C2' |
N |
Y |
N |
0 |
-0.87 |
0.341 |
3.756 |
18 |
C3' |
C |
C3' |
N |
Y |
N |
0 |
0.163 |
0.796 |
4.561 |
19 |
C4' |
C |
C4' |
N |
Y |
N |
0 |
1.475 |
0.614 |
4.169 |
20 |
C5' |
C |
C5' |
N |
Y |
N |
0 |
1.758 |
-0.022 |
2.969 |
21 |
C6' |
C |
C6' |
N |
Y |
N |
0 |
0.724 |
-0.471 |
2.161 |
22 |
HC61 |
H |
1HC6 |
N |
N |
N |
0 |
-1.105 |
-3.276 |
1.451 |
23 |
O2' |
O |
O2' |
N |
N |
N |
0 |
-2.162 |
0.52 |
4.142 |
24 |
C21 |
C |
C21 |
N |
N |
N |
0 |
-2.127 |
1.196 |
5.4 |
25 |
O5' |
O |
O5' |
N |
N |
N |
0 |
3.05 |
-0.201 |
2.583 |
26 |
C51 |
C |
C51 |
N |
N |
N |
0 |
3.869 |
0.365 |
3.608 |
27 |
H7' |
H |
H7* |
N |
N |
N |
0 |
-1.607 |
1.17 |
0.222 |
28 |
HC62 |
H |
2HC6 |
N |
N |
N |
0 |
-1.436 |
-3.344 |
-0.296 |
29 |
HC63 |
H |
3HC6 |
N |
N |
N |
0 |
0.21 |
-2.998 |
0.285 |
30 |
H5' |
H |
H5* |
N |
N |
N |
0 |
-0.145 |
-2.294 |
-1.82 |
31 |
HN41 |
H |
1HN4 |
N |
N |
N |
0 |
1.064 |
-2.614 |
-5.076 |
32 |
HN42 |
H |
2HN4 |
N |
N |
N |
0 |
0.559 |
-2.877 |
-3.495 |
33 |
HN21 |
H |
1HN2 |
N |
N |
N |
0 |
0.829 |
1.64 |
-6.94 |
34 |
HN22 |
H |
2HN2 |
N |
N |
N |
0 |
0.245 |
2.95 |
-6.066 |
35 |
HC71 |
H |
1HC7 |
N |
N |
N |
0 |
-2.307 |
-1.515 |
2.23 |
36 |
HC72 |
H |
2HC7 |
N |
N |
N |
0 |
-2.34 |
0.053 |
1.39 |
37 |
HC3' |
H |
HC3' |
N |
N |
N |
0 |
-0.057 |
1.291 |
5.495 |
38 |
HC4' |
H |
HC4' |
N |
N |
N |
0 |
2.28 |
0.967 |
4.796 |
39 |
HC6' |
H |
HC6' |
N |
N |
N |
0 |
0.945 |
-0.966 |
1.227 |
40 |
HC21 |
H |
1HC2 |
N |
N |
N |
0 |
-3.145 |
1.362 |
5.752 |
41 |
HC22 |
H |
2HC2 |
N |
N |
N |
0 |
-1.587 |
0.586 |
6.125 |
42 |
HC23 |
H |
3HC2 |
N |
N |
N |
0 |
-1.621 |
2.154 |
5.284 |
43 |
HC51 |
H |
1HC5 |
N |
N |
N |
0 |
4.919 |
0.245 |
3.341 |
44 |
HC52 |
H |
2HC5 |
N |
N |
N |
0 |
3.64 |
1.426 |
3.711 |
45 |
HC53 |
H |
3HC5 |
N |
N |
N |
0 |
3.674 |
-0.142 |
4.552 |
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