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PDBeChem : Chemical Bonds
Molecule :
PRD
Bonds between two atoms of the molecule
Total Number of Bonds: 47
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C4A
C8A
C
C
doub
1.42
N
Y
2
C4A
C5B
C
C
sing
1.4
N
Y
3
C4A
C4B
C
C
sing
1.42
N
Y
4
C8A
N1'
C
N
sing
1.34
N
Y
5
C8A
N8'
C
N
sing
1.33
N
Y
6
N1'
C2B
N
C
doub
1.32
N
Y
7
N8'
C7B
N
C
doub
1.31
N
Y
8
C7B
C6B
C
C
sing
1.4
N
Y
9
C7B
H7'
C
H
sing
1.08
N
N
10
C6B
N6'
C
N
sing
1.4
N
N
11
C6B
C5B
C
C
doub
1.39
N
Y
12
N6'
C61
N
C
sing
1.46
N
N
13
N6'
C7'
N
C
sing
1.47
N
N
14
C61
HC61
C
H
sing
1.09
N
N
15
C61
HC62
C
H
sing
1.09
N
N
16
C61
HC63
C
H
sing
1.09
N
N
17
C5B
H5'
C
H
sing
1.08
N
N
18
C4B
N4'
C
N
sing
1.38
N
N
19
C4B
N3'
C
N
doub
1.33
N
Y
20
N4'
HN41
N
H
sing
0.97
N
N
21
N4'
HN42
N
H
sing
0.97
N
N
22
N3'
C2B
N
C
sing
1.33
N
Y
23
C2B
N2'
C
N
sing
1.38
N
N
24
N2'
HN21
N
H
sing
0.97
N
N
25
N2'
HN22
N
H
sing
0.97
N
N
26
C7'
C1'
C
C
sing
1.51
N
N
27
C7'
HC71
C
H
sing
1.09
N
N
28
C7'
HC72
C
H
sing
1.09
N
N
29
C1'
C2'
C
C
doub
1.39
N
Y
30
C1'
C6'
C
C
sing
1.38
N
Y
31
C2'
C3'
C
C
sing
1.39
N
Y
32
C2'
O2'
C
O
sing
1.36
N
N
33
C3'
C4'
C
C
doub
1.38
N
Y
34
C3'
HC3'
C
H
sing
1.08
N
N
35
C4'
C5'
C
C
sing
1.39
N
Y
36
C4'
HC4'
C
H
sing
1.08
N
N
37
C5'
C6'
C
C
doub
1.39
N
Y
38
C5'
O5'
C
O
sing
1.36
N
N
39
C6'
HC6'
C
H
sing
1.08
N
N
40
O2'
C21
O
C
sing
1.43
N
N
41
C21
HC21
C
H
sing
1.09
N
N
42
C21
HC22
C
H
sing
1.09
N
N
43
C21
HC23
C
H
sing
1.09
N
N
44
O5'
C51
O
C
sing
1.43
N
N
45
C51
HC51
C
H
sing
1.09
N
N
46
C51
HC52
C
H
sing
1.09
N
N
47
C51
HC53
C
H
sing
1.09
N
N