Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PRD    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C4A C8A C C doub 1.42 N Y
2 C4A C5B C C sing 1.4 N Y
3 C4A C4B C C sing 1.42 N Y
4 C8A N1' C N sing 1.34 N Y
5 C8A N8' C N sing 1.33 N Y
6 N1' C2B N C doub 1.32 N Y
7 N8' C7B N C doub 1.31 N Y
8 C7B C6B C C sing 1.4 N Y
9 C7B H7' C H sing 1.08 N N
10 C6B N6' C N sing 1.4 N N
11 C6B C5B C C doub 1.39 N Y
12 N6' C61 N C sing 1.46 N N
13 N6' C7' N C sing 1.47 N N
14 C61 HC61 C H sing 1.09 N N
15 C61 HC62 C H sing 1.09 N N
16 C61 HC63 C H sing 1.09 N N
17 C5B H5' C H sing 1.08 N N
18 C4B N4' C N sing 1.38 N N
19 C4B N3' C N doub 1.33 N Y
20 N4' HN41 N H sing 0.97 N N
21 N4' HN42 N H sing 0.97 N N
22 N3' C2B N C sing 1.33 N Y
23 C2B N2' C N sing 1.38 N N
24 N2' HN21 N H sing 0.97 N N
25 N2' HN22 N H sing 0.97 N N
26 C7' C1' C C sing 1.51 N N
27 C7' HC71 C H sing 1.09 N N
28 C7' HC72 C H sing 1.09 N N
29 C1' C2' C C doub 1.39 N Y
30 C1' C6' C C sing 1.38 N Y
31 C2' C3' C C sing 1.39 N Y
32 C2' O2' C O sing 1.36 N N
33 C3' C4' C C doub 1.38 N Y
34 C3' HC3' C H sing 1.08 N N
35 C4' C5' C C sing 1.39 N Y
36 C4' HC4' C H sing 1.08 N N
37 C5' C6' C C doub 1.39 N Y
38 C5' O5' C O sing 1.36 N N
39 C6' HC6' C H sing 1.08 N N
40 O2' C21 O C sing 1.43 N N
41 C21 HC21 C H sing 1.09 N N
42 C21 HC22 C H sing 1.09 N N
43 C21 HC23 C H sing 1.09 N N
44 O5' C51 O C sing 1.43 N N
45 C51 HC51 C H sing 1.09 N N
46 C51 HC52 C H sing 1.09 N N
47 C51 HC53 C H sing 1.09 N N