Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PUY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 4.562 -1.502 1.933
2 CA C CA S N N 0 3.63 -0.755 1.078
3 CB C CB N N N 0 4.188 -0.685 -0.345
4 CG C CG N Y N 0 5.463 0.119 -0.346
5 CD1 C CD1 N Y N 0 6.677 -0.512 -0.148
6 CD2 C CD2 N Y N 0 5.416 1.487 -0.544
7 CE1 C CE1 N Y N 0 7.847 0.223 -0.149
8 CE2 C CE2 N Y N 0 6.582 2.227 -0.54
9 CZ C CZ N Y N 0 7.802 1.596 -0.348
10 O O O N N N 0 2.217 -2.621 1.374
11 OM O OM N N N 0 8.951 2.321 -0.349
12 CMZ C CMZ N N N 0 8.581 3.682 -0.575
13 C C C N N N 0 2.295 -1.453 1.06
14 O5' O O5* N N N 0 -0.204 -4.205 -1.919
15 C5' C C5* N N N 0 -0.014 -3.619 -0.63
16 C4' C C4* S N N 0 -0.353 -2.128 -0.693
17 O4' O O4* N N N 0 -1.765 -1.944 -0.948
18 C1' C C1* R N N 0 -2.062 -0.601 -0.506
19 N9 N N9 N Y N 0 -3.496 -0.452 -0.249
20 C4 C C4 N Y N 0 -4.193 0.729 -0.197
21 N3 N N3 N Y N 0 -3.879 2.011 -0.352
22 C2 C C2 N Y N 0 -4.801 2.945 -0.246
23 N1 N N1 N Y N 0 -6.066 2.666 0.01
24 C6 C C6 N Y N 0 -6.475 1.412 0.175
25 N6 N N6 N N N 0 -7.803 1.13 0.442
26 C9 C C9 N N N 0 -8.508 2.418 0.483
27 C10 C C10 N N N 0 -8.322 0.401 -0.723
28 C5 C C5 N Y N 0 -5.527 0.38 0.071
29 N7 N N7 N Y N 0 -5.574 -0.97 0.175
30 C8 C C8 N Y N 0 -4.383 -1.46 -0.013
31 C2' C C2* R N N 0 -1.26 -0.431 0.804
32 O2' O O2* N N N 0 -0.738 0.895 0.906
33 C3' C C3* S N N 0 -0.112 -1.457 0.677
34 N3' N N3* N N N 0 1.187 -0.778 0.695
35 HN1 H 1HN N N N 0 4.645 -2.425 1.534
36 HN2 H 2HN N N N 0 5.464 -1.061 1.833
37 HA H HA N N N 0 3.507 0.255 1.47
38 HB1 H 1HB N N N 0 3.457 -0.209 -0.999
39 HB2 H 2HB N N N 0 4.394 -1.693 -0.705
40 HD1 H HD1 N N N 0 6.711 -1.58 0.006
41 HD2 H HD2 N N N 0 4.466 1.977 -0.699
42 HE1 H HE1 N N N 0 8.795 -0.27 0.005
43 HE2 H HE2 N N N 0 6.545 3.295 -0.695
44 HMZ1 H 1HMZ N N N 0 9.475 4.306 -0.584
45 HMZ2 H 2HMZ N N N 0 8.07 3.765 -1.535
46 HMZ3 H 3HMZ N N N 0 7.914 4.015 0.221
47 H5' H H5* N N N 0 0.02 -5.142 -1.836
48 H5'1 H 1H5* N N N 0 1.025 -3.742 -0.325
49 H5'' H 2H5* N N N 0 -0.666 -4.11 0.092
50 H4' H H4* N N N 0 0.239 -1.637 -1.464
51 H1' H H1* N N N 0 -1.732 0.125 -1.249
52 H2 H H2 N N N 0 -4.512 3.978 -0.373
53 H91 H 1H9 N N N 0 -9.565 2.247 0.692
54 H92 H 2H9 N N N 0 -8.079 3.042 1.267
55 H93 H 3H9 N N N 0 -8.405 2.92 -0.479
56 H101 H 1H10 N N N 0 -7.751 -0.517 -0.862
57 H102 H 2H10 N N N 0 -9.372 0.155 -0.559
58 H103 H 3H10 N N N 0 -8.23 1.024 -1.612
59 H8 H H8 N N N 0 -4.133 -2.51 0.015
60 H2' H H2* N N N 0 -1.885 -0.662 1.666
61 H1 H H1 N N N 0 -1.498 1.49 0.982
62 H3' H H3* N N N 0 -0.167 -2.193 1.479
63 H3 H H3 N N N 0 1.249 0.157 0.443