Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PUY    

Bonds between two atoms of the molecule

Total Number of Bonds: 66


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CA N C sing 1.47 N N
2 N HN1 N H sing 1.01 N N
3 N HN2 N H sing 1.01 N N
4 CA CB C C sing 1.53 N N
5 CA C C C sing 1.51 N N
6 CA HA C H sing 1.09 N N
7 CB CG C C sing 1.51 N N
8 CB HB1 C H sing 1.09 N N
9 CB HB2 C H sing 1.09 N N
10 CG CD1 C C doub 1.38 N Y
11 CG CD2 C C sing 1.38 N Y
12 CD1 CE1 C C sing 1.38 N Y
13 CD1 HD1 C H sing 1.08 N N
14 CD2 CE2 C C doub 1.38 N Y
15 CD2 HD2 C H sing 1.08 N N
16 CE1 CZ C C doub 1.39 N Y
17 CE1 HE1 C H sing 1.08 N N
18 CE2 CZ C C sing 1.39 N Y
19 CE2 HE2 C H sing 1.08 N N
20 CZ OM C O sing 1.36 N N
21 O C O C doub 1.21 N N
22 OM CMZ O C sing 1.43 N N
23 CMZ HMZ1 C H sing 1.09 N N
24 CMZ HMZ2 C H sing 1.09 N N
25 CMZ HMZ3 C H sing 1.09 N N
26 C N3' C N sing 1.35 N N
27 O5' C5' O C sing 1.43 N N
28 O5' H5' O H sing 0.97 N N
29 C5' C4' C C sing 1.53 N N
30 C5' H5'1 C H sing 1.09 N N
31 C5' H5'' C H sing 1.09 N N
32 C4' O4' C O sing 1.45 N N
33 C4' C3' C C sing 1.54 N N
34 C4' H4' C H sing 1.09 N N
35 O4' C1' O C sing 1.44 N N
36 C1' N9 C N sing 1.46 N N
37 C1' C2' C C sing 1.55 N N
38 C1' H1' C H sing 1.09 N N
39 N9 C4 N C sing 1.37 N Y
40 N9 C8 N C sing 1.36 N Y
41 C4 N3 C N doub 1.33 N Y
42 C4 C5 C C sing 1.4 N Y
43 N3 C2 N C sing 1.32 N Y
44 C2 N1 C N doub 1.32 N Y
45 C2 H2 C H sing 1.08 N N
46 N1 C6 N C sing 1.33 N Y
47 C6 N6 C N sing 1.38 N N
48 C6 C5 C C doub 1.41 N Y
49 N6 C9 N C sing 1.47 N N
50 N6 C10 N C sing 1.47 N N
51 C9 H91 C H sing 1.09 N N
52 C9 H92 C H sing 1.09 N N
53 C9 H93 C H sing 1.09 N N
54 C10 H101 C H sing 1.09 N N
55 C10 H102 C H sing 1.09 N N
56 C10 H103 C H sing 1.09 N N
57 C5 N7 C N sing 1.35 N Y
58 N7 C8 N C doub 1.3 N Y
59 C8 H8 C H sing 1.08 N N
60 C2' O2' C O sing 1.43 N N
61 C2' C3' C C sing 1.54 N N
62 C2' H2' C H sing 1.09 N N
63 O2' H1 O H sing 0.97 N N
64 C3' N3' C N sing 1.47 N N
65 C3' H3' C H sing 1.09 N N
66 N3' H3 N H sing 0.97 N N