Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RD6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N N N 0 3.904 -1.818 -1.305
2 C03 C C2 S N N 0 3.835 -0.475 -0.626
3 C04 C C3 N N N 0 2.592 0.305 -1.103
4 C06 C C4 N Y N 0 1.065 1.718 0.012
5 C07 C C5 N Y N 0 -0.333 1.775 -0.017
6 C08 C C6 N Y N 0 -1.409 0.772 0.007
7 C09 C C7 N Y N 0 -2.615 1.488 -0.048
8 C10 C C8 N Y N 0 -3.82 0.795 -0.04
9 C11 C C9 N Y N 0 -3.824 -0.583 0.021
10 C12 C C10 N Y N 0 -2.631 -1.29 0.075
11 C13 C C11 N Y N 0 -1.427 -0.62 0.068
12 C16 C C12 N Y N 0 -0.957 3.031 -0.084
13 C18 C C13 N Y N 0 1.123 4.021 -0.088
14 C20 C C14 N N N 0 2.622 0.447 1.263
15 C21 C C15 N N N 0 3.63 -0.65 0.885
16 C22 C C16 N N N 0 3.292 -2.059 1.358
17 C23 C C17 N N N 0 4.158 -1.755 2.595
18 C24 C C18 N N N 0 4.896 -0.714 1.732
19 F25 F F1 N N N 0 4.998 0.259 -0.88
20 N05 N N1 N N N 0 1.723 0.503 0.079
21 N15 N N2 N Y N 0 -2.316 2.839 -0.102
22 N17 N N3 N Y N 0 -0.189 4.12 -0.118
23 N19 N N4 N Y N 0 1.748 2.861 -0.03
24 O01 O O1 N N N 0 2.953 -2.231 -1.925
25 O26 O O2 N N N 0 5.024 -2.553 -1.225
26 BR14 BR BR1 N N N 0 -5.468 -1.517 0.031
27 H041 H H1 N N N 0 2.893 1.271 -1.509
28 H042 H H2 N N N 0 2.063 -0.269 -1.864
29 H101 H H3 N N N 0 -4.754 1.335 -0.082
30 H121 H H4 N N N 0 -2.646 -2.368 0.123
31 H131 H H5 N N N 0 -0.5 -1.172 0.11
32 H181 H H6 N N N 0 1.712 4.926 -0.121
33 H201 H H7 N N N 0 2.064 0.166 2.157
34 H202 H H8 N N N 0 3.128 1.402 1.408
35 H221 H H9 N N N 0 2.236 -2.202 1.588
36 H222 H H10 N N N 0 3.697 -2.845 0.72
37 H231 H H11 N N N 0 3.599 -1.318 3.422
38 H232 H H12 N N N 0 4.786 -2.591 2.903
39 H242 H H13 N N N 0 5.758 -1.117 1.201
40 H241 H H14 N N N 0 5.117 0.214 2.259
41 H151 H H15 N N N 0 -2.975 3.55 -0.146
42 H1 H H16 N N N 0 5.021 -3.408 -1.677