Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SDL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5 O O1 N N N 0 -0.522 -2.154 0.201
2 C5 C C1 N N N 0 0.25 -1.213 0.22
3 N1 N N1 N N N 0 1.587 -1.306 0.359
4 C10 C C2 N N N 0 2.354 -2.544 0.513
5 C11 C C3 N N N 0 2.758 -3.057 -0.846
6 C12 C C4 N N N 0 4.019 -3.292 -1.109
7 C6 C C5 N N N 0 2.112 -0.011 0.33
8 C9 C C6 N N N 0 1.039 0.858 0.169
9 N4 N N2 N N N 0 1.26 2.176 0.107
10 C8 C C7 N N N 0 2.477 2.665 0.204
11 N3 N N3 N N N 0 2.658 4.023 0.135
12 N2 N N4 N N N 0 3.562 1.859 0.372
13 C7 C C8 N N N 0 3.407 0.518 0.426
14 O4 O O2 N N N 0 4.372 -0.216 0.569
15 N N N5 N N N 0 -0.1 0.082 0.098
16 C4 C C9 R N N 0 -1.465 0.584 -0.072
17 C3 C C10 R N N 0 -2.074 0.052 -1.388
18 O2 O O3 N N N 0 -1.968 1.034 -2.421
19 C2 C C11 S N N 0 -3.556 -0.21 -1.037
20 O1 O O4 N N N 0 -4.412 0.602 -1.842
21 O3 O O5 N N N 0 -2.324 0.067 0.968
22 C1 C C12 R N N 0 -3.667 0.194 0.45
23 C C C13 N N N 0 -4.614 -0.752 1.189
24 O O O6 N N N 0 -4.794 -0.294 2.531
25 H1 H H1 N N N 0 3.247 -2.347 1.106
26 H2 H H2 N N N 0 1.741 -3.291 1.016
27 H3 H H3 N N N 0 2.007 -3.23 -1.602
28 H4 H H4 N N N 0 4.77 -3.118 -0.353
29 H5 H H5 N N N 0 4.309 -3.659 -2.083
30 H7 H H7 N N N 0 1.895 4.609 0.016
31 H8 H H8 N N N 0 3.55 4.398 0.206
32 H9 H H9 N N N 0 -1.471 1.674 -0.062
33 H10 H H10 N N N 0 -1.583 -0.873 -1.69
34 H11 H H11 N N N 0 -2.335 0.752 -3.27
35 H12 H H12 N N N 0 -3.797 -1.266 -1.165
36 H13 H H13 N N N 0 -5.355 0.477 -1.663
37 H14 H H14 N N N 0 -4.012 1.224 0.538
38 H15 H H15 N N N 0 -5.578 -0.773 0.68
39 H16 H H16 N N N 0 -4.189 -1.756 1.202
40 H17 H H17 N N N 0 -5.385 -0.847 3.06
41 H6 H H6 N N N 0 4.448 2.248 0.44