Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SDL    

Bonds between two atoms of the molecule

Total Number of Bonds: 43


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C2 O C sing 1.43 N N
2 C2 C3 C C sing 1.55 N N
3 C2 C1 C C sing 1.54 N N
4 O2 C3 O C sing 1.43 N N
5 O C O C sing 1.43 N N
6 C C1 C C sing 1.53 N N
7 C3 C4 C C sing 1.54 N N
8 C1 O3 C O sing 1.45 N N
9 N3 C8 N C sing 1.37 N N
10 C4 O3 C O sing 1.44 N N
11 C4 N C N sing 1.46 N N
12 N4 C8 N C doub 1.32 N N
13 N4 C9 N C sing 1.34 N N
14 C8 N2 C N sing 1.36 N N
15 C9 N C N sing 1.38 N N
16 C9 C6 C C doub 1.39 N N
17 N C5 N C sing 1.35 N N
18 N2 C7 N C sing 1.35 N N
19 C5 O5 C O doub 1.22 N N
20 C5 N1 C N sing 1.35 N N
21 C6 C7 C C sing 1.4 N N
22 C6 N1 C N sing 1.4 N N
23 C7 O4 C O doub 1.22 N N
24 N1 C10 N C sing 1.46 N N
25 C12 C11 C C doub 1.31 N N
26 C11 C10 C C sing 1.51 N N
27 C10 H1 C H sing 1.09 N N
28 C10 H2 C H sing 1.09 N N
29 C11 H3 C H sing 1.08 N N
30 C12 H4 C H sing 1.08 N N
31 C12 H5 C H sing 1.08 N N
32 N3 H7 N H sing 0.97 N N
33 N3 H8 N H sing 0.97 N N
34 C4 H9 C H sing 1.09 N N
35 C3 H10 C H sing 1.09 N N
36 O2 H11 O H sing 0.97 N N
37 C2 H12 C H sing 1.09 N N
38 O1 H13 O H sing 0.97 N N
39 C1 H14 C H sing 1.09 N N
40 C H15 C H sing 1.09 N N
41 C H16 C H sing 1.09 N N
42 O H17 O H sing 0.97 N N
43 N2 H6 N H sing 0.97 N N