Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SM5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C18 C C18 N N N 0 -4.239 0.55 -0.188
2 N4 N N4 N Y N 0 -2.87 0.029 -0.147
3 C14 C C14 N Y N 0 2.888 0.005 1.128
4 C13 C C13 N Y N 0 1.563 -0.348 1.02
5 C12 C C12 N Y N 0 0.743 0.296 0.094
6 C17 C C17 N Y N 0 1.268 1.296 -0.723
7 C16 C C16 N Y N 0 2.597 1.652 -0.618
8 C15 C C15 N Y N 0 3.419 1.015 0.311
9 C11 C C11 N Y N 0 0.863 -2.664 -0.837
10 N3 N N3 N Y N 0 -2.505 -1.319 -0.24
11 C10 C C10 N Y N 0 1.579 -3.843 -0.863
12 C8 C C8 N Y N 0 -0.091 -4.97 0.263
13 C22 C C22 N N N 0 -5.674 2.468 -0.893
14 C7 C C7 N Y N 0 -0.871 -3.835 0.338
15 C5 C C5 N Y N 0 -1.75 0.768 -0.019
16 C6 C C6 N Y N 0 -0.392 -2.646 -0.222
17 C1 C C1 N Y N 0 -0.685 -0.084 -0.023
18 C19 C C19 N N N 0 -4.759 0.736 1.24
19 C20 C C20 N N N 0 -6.166 1.336 1.192
20 C2 C C2 N Y N 0 -1.194 -1.401 -0.165
21 C24 C C24 N N N 0 3.395 2.687 -1.375
22 N9 N N9 N Y N 0 1.091 -4.944 -0.322
23 N21 N N21 N N N 0 -6.125 2.628 0.495
24 C23 C C23 N N N 0 -4.251 1.901 -0.908
25 C25 C C25 N N N 0 4.823 2.625 -0.818
26 C26 C C26 N N N 0 4.791 1.555 0.246
27 N27 N N27 N N N 0 5.791 1.178 0.976
28 O28 O O28 N N N 0 7.059 1.785 0.806
29 H18 H H18 N N N 0 -4.88 -0.152 -0.72
30 H14 H H14 N N N 0 3.521 -0.494 1.846
31 H13 H H13 N N N 0 1.158 -1.123 1.654
32 H17 H H17 N N N 0 0.634 1.791 -1.444
33 H11 H H11 N N N 0 1.269 -1.767 -1.281
34 H10 H H10 N N N 0 2.551 -3.866 -1.332
35 H8 H H8 N N N 0 -0.452 -5.893 0.692
36 H122 H H122 N N N 0 -6.343 1.783 -1.416
37 H222 H H222 N N N 0 -5.684 3.437 -1.392
38 H7 H H7 N N N 0 -1.837 -3.864 0.818
39 H5 H H5 N N N 0 -1.703 1.843 0.071
40 H119 H H119 N N N 0 -4.792 -0.23 1.744
41 H219 H H219 N N N 0 -4.095 1.408 1.785
42 H120 H H120 N N N 0 -6.832 0.657 0.66
43 H220 H H220 N N N 0 -6.533 1.483 2.208
44 H123 H H123 N N N 0 -3.579 2.592 -0.398
45 H223 H H223 N N N 0 -3.923 1.768 -1.939
46 H24 H H24 N N N 0 3.398 2.452 -2.439
47 H25 H H25 N N N 0 5.525 2.355 -1.607
48 HO28 H HO28 N N N 0 7.743 1.437 1.395
49 H121 H H121 N N N 0 -5.544 3.288 0.99
50 H22 H H22 N N N 0 2.972 3.678 -1.212
51 H23 H H23 N N N 0 5.099 3.583 -0.378