Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SM5    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C18 H18 C H sing 1.09 N N
2 N4 C18 N C sing 1.47 N N
3 N4 C5 N C sing 1.35 N Y
4 C14 H14 C H sing 1.08 N N
5 C13 C14 C C sing 1.38 N Y
6 C13 H13 C H sing 1.08 N N
7 C12 C13 C C doub 1.39 N Y
8 C17 C16 C C doub 1.38 N Y
9 C17 C12 C C sing 1.39 N Y
10 C17 H17 C H sing 1.08 N N
11 C16 C15 C C sing 1.39 N Y
12 C15 C26 C C sing 1.48 N N
13 C15 C14 C C doub 1.4 N Y
14 C11 H11 C H sing 1.08 N N
15 N3 C2 N C doub 1.32 N Y
16 N3 N4 N N sing 1.4 N Y
17 C10 C11 C C sing 1.38 N Y
18 C10 H10 C H sing 1.08 N N
19 C8 C7 C C doub 1.38 N Y
20 C8 N9 C N sing 1.32 N Y
21 C8 H8 C H sing 1.08 N N
22 C22 H122 C H sing 1.09 N N
23 C22 H222 C H sing 1.09 N N
24 C7 C6 C C sing 1.4 N Y
25 C7 H7 C H sing 1.08 N N
26 C5 H5 C H sing 1.08 N N
27 C6 C2 C C sing 1.48 N Y
28 C6 C11 C C doub 1.4 N Y
29 C1 C5 C C doub 1.36 N Y
30 C1 C12 C C sing 1.48 N Y
31 C19 C20 C C sing 1.53 N N
32 C19 C18 C C sing 1.53 N N
33 C19 H119 C H sing 1.09 N N
34 C19 H219 C H sing 1.09 N N
35 C20 H120 C H sing 1.09 N N
36 C20 H220 C H sing 1.09 N N
37 C2 C1 C C sing 1.42 N Y
38 N9 C10 N C doub 1.32 N Y
39 N21 C22 N C sing 1.47 N N
40 N21 C20 N C sing 1.47 N N
41 C23 C22 C C sing 1.53 N N
42 C23 C18 C C sing 1.53 N N
43 C23 H123 C H sing 1.09 N N
44 C23 H223 C H sing 1.09 N N
45 C24 C16 C C sing 1.51 N N
46 C24 C25 C C sing 1.53 N N
47 C24 H24 C H sing 1.09 N N
48 C25 C26 C C sing 1.51 N N
49 C25 H25 C H sing 1.09 N N
50 C26 N27 C N doub 1.29 N N
51 N27 O28 N O sing 1.42 N N
52 O28 HO28 O H sing 0.97 N N
53 N21 H121 N H sing 1.01 E N
54 C24 H22 C H sing 1.09 N N
55 C25 H23 C H sing 1.09 N N