Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : T0T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -5.27 2.276 -0.221
2 C1 C C1 N Y N 0 -0.181 -1.94 -0.349
3 C2 C C2 N Y N 0 0.733 -2.846 -0.858
4 C3 C C3 N Y N 0 2.076 -2.535 -0.882
5 C4 C C4 N Y N 0 2.514 -1.302 -0.391
6 C5 C C5 N Y N 0 1.585 -0.392 0.121
7 C6 C C6 N Y N 0 0.244 -0.717 0.139
8 C7 C C7 N N N 0 3.948 -0.963 -0.413
9 C8 C C8 N N N 0 4.365 0.224 0.059
10 C9 C C9 N Y N 0 5.797 0.562 0.037
11 C1' C C1' R N N 0 -1.648 -2.285 -0.331
12 C10 C C10 N Y N 0 6.726 -0.346 -0.474
13 C11 C C11 N Y N 0 8.067 -0.022 -0.492
14 C12 C C12 N Y N 0 8.498 1.2 -0.004
15 C13 C C13 N Y N 0 7.59 2.109 0.505
16 C14 C C14 N Y N 0 6.237 1.804 0.525
17 N15 N N15 N N N 0 5.319 2.721 1.033
18 C2' C C2' N N N 0 -2.079 -2.764 1.079
19 C3' C C3' S N N 0 -3.595 -2.45 1.078
20 O3' O O3' N N N 0 -4.349 -3.621 0.76
21 C4' C C4' R N N 0 -3.76 -1.386 -0.025
22 O4' O O4' N N N 0 -2.451 -1.104 -0.546
23 C5' C C5' N N N 0 -4.37 -0.113 0.567
24 O5' O O5' N N N 0 -4.627 0.823 -0.481
25 OP1 O OP1 N N N 0 -5.537 3.005 -1.631
26 OP2 O OP2 N N N 0 -6.549 2.126 0.508
27 OP3 O OP3 N N N 0 -4.253 3.163 0.658
28 H2 H H2 N N N 0 0.393 -3.798 -1.237
29 H3 H H3 N N N 0 2.789 -3.243 -1.28
30 H5 H H5 N N N 0 1.916 0.563 0.502
31 H6 H H6 N N N 0 -0.475 -0.015 0.535
32 H7 H H7 N N N 0 4.663 -1.668 -0.81
33 H8 H H8 N N N 0 3.649 0.929 0.456
34 H1' H H1' N N N 0 -1.872 -3.045 -1.08
35 H10 H H10 N N N 0 6.396 -1.301 -0.855
36 H11 H H11 N N N 0 8.785 -0.726 -0.887
37 H12 H H12 N N N 0 9.549 1.444 -0.022
38 H13 H H13 N N N 0 7.934 3.06 0.884
39 HN15 H HN15 N N N 0 4.374 2.504 1.05
40 HN1A H HN1A N N N 0 5.626 3.578 1.369
41 H2' H H2' N N N 0 -1.904 -3.833 1.197
42 H2'A H H2'A N N N 0 -1.565 -2.198 1.856
43 H3' H H3' N N N 0 -3.902 -2.05 2.045
44 HO3' H HO3' N N N 0 -4.236 -4.345 1.391
45 H4' H H4' N N N 0 -4.4 -1.771 -0.819
46 H5' H H5' N N N 0 -5.305 -0.359 1.072
47 H5'A H H5'A N N N 0 -3.674 0.324 1.283
48 H21 H H21 N N N 0 -5.925 3.888 -1.55
49 H23 H H23 N N N 0 -3.392 3.303 0.241