Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : T0T    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O5' P O sing 1.61 N N
2 P OP1 P O sing 1.61 N N
3 P OP2 P O doub 1.48 N N
4 P OP3 P O sing 1.61 N N
5 C1 C2 C C doub 1.38 N Y
6 C1 C6 C C sing 1.38 N Y
7 C1 C1' C C sing 1.51 N N
8 C2 C3 C C sing 1.38 N Y
9 C3 C4 C C doub 1.4 N Y
10 C4 C5 C C sing 1.4 N Y
11 C4 C7 C C sing 1.47 N N
12 C5 C6 C C doub 1.38 N Y
13 C7 C8 C C doub 1.34 E N
14 C8 C9 C C sing 1.47 N N
15 C9 C10 C C doub 1.4 N Y
16 C9 C14 C C sing 1.41 N Y
17 C1' C2' C C sing 1.55 N N
18 C1' O4' C O sing 1.44 N N
19 C10 C11 C C sing 1.38 N Y
20 C11 C12 C C doub 1.38 N Y
21 C12 C13 C C sing 1.38 N Y
22 C13 C14 C C doub 1.39 N Y
23 C14 N15 C N sing 1.39 N N
24 C2' C3' C C sing 1.55 N N
25 C3' O3' C O sing 1.43 N N
26 C3' C4' C C sing 1.54 N N
27 C4' O4' C O sing 1.44 N N
28 C4' C5' C C sing 1.53 N N
29 C5' O5' C O sing 1.43 N N
30 C2 H2 C H sing 1.08 N N
31 C3 H3 C H sing 1.08 N N
32 C5 H5 C H sing 1.08 N N
33 C6 H6 C H sing 1.08 N N
34 C7 H7 C H sing 1.08 N N
35 C8 H8 C H sing 1.08 N N
36 C1' H1' C H sing 1.09 N N
37 C10 H10 C H sing 1.08 N N
38 C11 H11 C H sing 1.08 N N
39 C12 H12 C H sing 1.08 N N
40 C13 H13 C H sing 1.08 N N
41 N15 HN15 N H sing 0.97 N N
42 N15 HN1A N H sing 0.97 N N
43 C2' H2' C H sing 1.09 N N
44 C2' H2'A C H sing 1.09 N N
45 C3' H3' C H sing 1.09 N N
46 O3' HO3' O H sing 0.97 N N
47 C4' H4' C H sing 1.09 N N
48 C5' H5' C H sing 1.09 N N
49 C5' H5'A C H sing 1.09 N N
50 OP1 H21 O H sing 0.97 N N
51 OP3 H23 O H sing 0.97 N N