Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T5A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 85


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1B N BN1 N N N 0 -0.041 1.135 -11.695
2 C6B C BC6 N N N 0 0.166 2.281 -12.412
3 C2B C BC2 N N N 0 0.917 0.194 -11.613
4 O2B O BO2 N N N 0 0.711 -0.816 -10.97
5 N3B N BN3 N N N 0 2.101 0.357 -12.233
6 C4B C BC4 N N N 0 2.343 1.471 -12.953
7 O4B O BO4 N N N 0 3.414 1.619 -13.515
8 C5B C BC5 N N N 0 1.345 2.471 -13.043
9 C7B C BC7 N N N 0 1.592 3.727 -13.839
10 C5E C BC5* N N N 0 -1.646 -0.86 -7.835
11 C4E C BC4* R N N 0 -2.092 -0.193 -9.138
12 O4E O BO4* N N N 0 -1.095 0.744 -9.602
13 C1E C BC1* R N N 0 -1.319 0.929 -11.009
14 C2E C BC2* N N N 0 -1.999 -0.347 -11.54
15 C3E C BC3* S N N 0 -2.175 -1.233 -10.284
16 O3E O BO3* N N N 0 -3.447 -1.884 -10.292
17 PA P PA R N N 0 -1.106 -0.648 -5.463
18 O1A O O1A N N N 0 0.336 -1.317 -5.712
19 O2A O O2A N N N 0 -2.087 -1.703 -5.127
20 O5E O BO5* N N N 0 -1.579 0.119 -6.797
21 O3A O O3A N N N 0 -1.008 0.401 -4.246
22 PB P PB S N N 0 -0.533 -0.429 -2.952
23 O1B O O1B N N N 0 0.784 -1.047 -3.219
24 O2X O O2B N N N 0 -1.61 -1.581 -2.628
25 O3B O O3B N N N 0 -0.413 0.564 -1.69
26 PC P PC N N N 0 0.063 -0.328 -0.439
27 O1C O O1C N N N 0 -0.936 -1.389 -0.179
28 O2C O O2C N N N 0 1.486 -1.003 -0.772
29 O3C O O3C N N N 0 0.204 0.605 0.864
30 PD P PD S N N 0 0.681 -0.347 2.071
31 O1D O O1D N N N 0 2.094 -1.021 1.695
32 O2D O O2D N N N 0 -0.327 -1.407 2.291
33 O3D O O3D N N N 0 0.843 0.527 3.413
34 PE P PE R N N 0 1.32 -0.483 4.572
35 O1E O O1E N N N 0 0.211 -1.634 4.77
36 O2E O O2E N N N 0 2.609 -1.1 4.188
37 O5F O AO5* N N N 0 1.502 0.328 5.95
38 O4F O AO4* N N N 0 0.87 0.657 8.713
39 C5F C AC5* N N N 0 1.924 -0.618 6.934
40 C4F C AC4* R N N 0 2.117 0.092 8.275
41 C1F C AC1* R N N 0 0.849 0.568 10.154
42 C2F C AC2* R N N 0 1.468 -0.823 10.439
43 O2F O AO2* N N N 0 2.046 -0.866 11.745
44 C3F C AC3* S N N 0 2.564 -0.921 9.346
45 O3F O AO3* N N N 0 3.839 -0.562 9.883
46 N9A N AN9 N Y N 0 -0.525 0.637 10.655
47 C4A C AC4 N Y N 0 -0.92 1.116 11.879
48 N3A N AN3 N Y N 0 -0.294 1.639 12.928
49 C2A C AC2 N Y N 0 -0.971 2.024 13.99
50 N1A N AN1 N Y N 0 -2.285 1.918 14.07
51 C6A C AC6 N Y N 0 -2.996 1.411 13.068
52 N6A N AN6 N N N 0 -4.373 1.304 13.161
53 C5A C AC5 N Y N 0 -2.319 0.987 11.913
54 N7A N AN7 N Y N 0 -2.697 0.439 10.733
55 C8A C AC8 N Y N 0 -1.646 0.233 9.993
56 HB6 H HB6 N N N 0 -0.607 3.032 -12.472
57 HN3 H HN3 N N N 0 2.781 -0.33 -12.164
58 HB71 H 1HB7 N N N 0 2.593 3.693 -14.269
59 HB72 H 2HB7 N N N 0 0.855 3.801 -14.638
60 HB73 H 3HB7 N N N 0 1.507 4.594 -13.184
61 HB51 H 1HB5 N N N 0 -2.363 -1.633 -7.559
62 HB52 H 2HB5 N N N 0 -0.663 -1.309 -7.975
63 HB4 H HB4 N N N 0 -3.052 0.305 -9.003
64 HB1 H HB1 N N N 0 -1.968 1.79 -11.171
65 HB21 H 1HB2 N N N 0 -2.968 -0.109 -11.978
66 HB22 H 2HB2 N N N 0 -1.36 -0.843 -12.271
67 HB3 H HB3 N N N 0 -1.368 -1.962 -10.206
68 HB'3 H 3HB* N N N 0 -3.468 -2.447 -11.079
69 HO1A H AHO1 N N N 0 0.945 -0.597 -5.928
70 HO2B H BHO2 N N N 0 -2.452 -1.136 -2.46
71 HO2C H CHO2 N N N 0 2.107 -0.279 -0.934
72 HO1D H DHO1 N N N 0 2.722 -0.297 1.56
73 HO1E H EHO1 N N N 0 -0.61 -1.19 5.018
74 HA51 H 1HA5 N N N 0 1.166 -1.394 7.04
75 HA52 H 2HA5 N N N 0 2.866 -1.07 6.624
76 HA4 H HA4 N N N 0 2.865 0.878 8.174
77 HA1 H HA1 N N N 0 1.458 1.357 10.596
78 HC2 H HC2 N N N 0 0.725 -1.611 10.318
79 HO2 H HO2 N N N 0 2.412 -1.754 11.86
80 HC3 H HC3 N N N 0 2.597 -1.927 8.928
81 HA3 H HA3 N N N 0 4.035 -1.197 10.586
82 HA2 H HA2 N N N 0 -0.431 2.441 14.827
83 HA61 H 1HA6 N N N 0 -4.829 1.6 13.964
84 HA62 H 2HA6 N N N 0 -4.881 0.932 12.423
85 HA8 H HA8 N N N 0 -1.66 -0.193 9.002