Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : T5A    

Bonds between two atoms of the molecule

Total Number of Bonds: 89


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1B C6B N C sing 1.37 N N
2 N1B C2B N C sing 1.35 N N
3 N1B C1E N C sing 1.47 N N
4 C6B C5B C C doub 1.35 N N
5 C6B HB6 C H sing 1.08 N N
6 C2B O2B C O doub 1.21 N N
7 C2B N3B C N sing 1.35 N N
8 N3B C4B N C sing 1.35 N N
9 N3B HN3 N H sing 0.97 N N
10 C4B O4B C O doub 1.22 N N
11 C4B C5B C C sing 1.42 N N
12 C5B C7B C C sing 1.51 N N
13 C7B HB71 C H sing 1.09 N N
14 C7B HB72 C H sing 1.09 N N
15 C7B HB73 C H sing 1.09 N N
16 C5E C4E C C sing 1.53 N N
17 C5E O5E C O sing 1.43 N N
18 C5E HB51 C H sing 1.09 N N
19 C5E HB52 C H sing 1.09 N N
20 C4E O4E C O sing 1.44 N N
21 C4E C3E C C sing 1.55 N N
22 C4E HB4 C H sing 1.09 N N
23 O4E C1E O C sing 1.44 N N
24 C1E C2E C C sing 1.54 N N
25 C1E HB1 C H sing 1.09 N N
26 C2E C3E C C sing 1.55 N N
27 C2E HB21 C H sing 1.09 N N
28 C2E HB22 C H sing 1.09 N N
29 C3E O3E C O sing 1.43 N N
30 C3E HB3 C H sing 1.09 N N
31 O3E HB'3 O H sing 0.97 N N
32 PA O1A P O sing 1.61 N N
33 PA O2A P O doub 1.48 N N
34 PA O5E P O sing 1.61 N N
35 PA O3A P O sing 1.61 N N
36 O1A HO1A O H sing 0.97 N N
37 O3A PB O P sing 1.61 N N
38 PB O1B P O doub 1.48 N N
39 PB O2X P O sing 1.61 N N
40 PB O3B P O sing 1.61 N N
41 O2X HO2B O H sing 0.97 N N
42 O3B PC O P sing 1.61 N N
43 PC O1C P O doub 1.48 N N
44 PC O2C P O sing 1.61 N N
45 PC O3C P O sing 1.61 N N
46 O2C HO2C O H sing 0.97 N N
47 O3C PD O P sing 1.61 N N
48 PD O1D P O sing 1.61 N N
49 PD O2D P O doub 1.48 N N
50 PD O3D P O sing 1.61 N N
51 O1D HO1D O H sing 0.97 N N
52 O3D PE O P sing 1.61 N N
53 PE O1E P O sing 1.61 N N
54 PE O2E P O doub 1.48 N N
55 PE O5F P O sing 1.61 N N
56 O1E HO1E O H sing 0.97 N N
57 O5F C5F O C sing 1.43 N N
58 C5F C4F C C sing 1.53 N N
59 C5F HA51 C H sing 1.09 N N
60 C5F HA52 C H sing 1.09 N N
61 C4F O4F C O sing 1.44 N N
62 C4F C3F C C sing 1.54 N N
63 C4F HA4 C H sing 1.09 N N
64 O4F C1F O C sing 1.44 N N
65 C1F C2F C C sing 1.55 N N
66 C1F N9A C N sing 1.46 N N
67 C1F HA1 C H sing 1.09 N N
68 C2F O2F C O sing 1.43 N N
69 C2F C3F C C sing 1.55 N N
70 C2F HC2 C H sing 1.09 N N
71 O2F HO2 O H sing 0.97 N N
72 C3F O3F C O sing 1.43 N N
73 C3F HC3 C H sing 1.09 N N
74 O3F HA3 O H sing 0.97 N N
75 N9A C4A N C sing 1.37 N Y
76 N9A C8A N C sing 1.36 N Y
77 C4A N3A C N sing 1.33 N Y
78 C4A C5A C C doub 1.41 N Y
79 N3A C2A N C doub 1.32 N Y
80 C2A N1A C N sing 1.32 N Y
81 C2A HA2 C H sing 1.08 N N
82 N1A C6A N C doub 1.33 N Y
83 C6A N6A C N sing 1.38 N N
84 C6A C5A C C sing 1.4 N Y
85 N6A HA61 N H sing 0.97 N N
86 N6A HA62 N H sing 0.97 N N
87 C5A N7A C N sing 1.35 N Y
88 N7A C8A N C doub 1.3 N Y
89 C8A HA8 C H sing 1.08 N N