Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : T6O

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C1 N N N 0 3.129 -1.69 2.437
2 N N N1 N N N 0 3.573 -0.982 0.083
3 O O O1 N N N 0 2.311 -1.719 -1.741
4 O6 O O2 N N N 0 -6.521 -2.88 -0.168
5 C9 C C2 N N N 0 -5.235 -2.497 -0.123
6 O7 O O3 N N N 0 -4.357 -3.327 -0.135
7 C6 C C3 N N N 0 -4.887 -1.032 -0.058
8 C7 C C4 N N N 0 -5.442 -0.321 -1.294
9 C8 C C5 N N N 0 -5.5 -0.418 1.202
10 O5 O O4 N N N 0 -3.467 -0.881 -0.019
11 N2 N N2 N N N 0 -3.032 0.465 0.043
12 C5 C C6 N N N 0 -1.759 0.737 0.083
13 C10 C C7 N Y N 0 -1.301 2.142 0.035
14 N3 N N3 N Y N 0 -0.012 2.472 -0.046
15 C12 C C8 N Y N 0 0.269 3.737 -0.082
16 N4 N N4 N N N 0 1.544 4.27 -0.166
17 S1 S S1 N Y N 0 -1.221 4.673 -0.011
18 C11 C C9 N Y N 0 -2.158 3.182 0.062
19 C4 C C10 N N N 0 -0.769 -0.361 0.178
20 O4 O O5 N N N 0 -1.136 -1.518 0.109
21 N1 N N5 N N N 0 0.539 -0.078 0.34
22 C2 C C11 R N N 0 1.503 -1.162 0.542
23 C3 C C12 N N N 0 2.471 -1.353 -0.595
24 S S S2 N N N 0 5.179 -0.843 -0.292
25 O2 O O6 N N N 0 5.726 0.094 0.626
26 O3 O O7 N N N 0 5.833 -2.182 0.019
27 O1 O O8 N N N 0 5.249 -0.681 -1.702
28 C1 C C13 R N N 0 2.773 -0.747 1.286
29 H1 H H1 N N N 0 4.033 -1.335 2.932
30 H2 H H2 N N N 0 2.308 -1.715 3.154
31 H6 H H6 N N N 0 -5.006 -0.759 -2.191
32 H3 H H3 N N N 0 3.299 -2.693 2.045
33 H4 H H4 N N N 0 -6.694 -3.831 -0.208
34 H5 H H5 N N N 0 -5.191 0.738 -1.247
35 H7 H H7 N N N 0 -6.526 -0.436 -1.323
36 H8 H H8 N N N 0 -5.105 -0.925 2.083
37 H12 H H12 N N N 0 1.667 5.232 -0.188
38 H9 H H9 N N N 0 -5.249 0.641 1.249
39 H10 H H10 N N N 0 -6.584 -0.533 1.173
40 H11 H H11 N N N 0 2.315 3.682 -0.201
41 H13 H H13 N N N 0 -3.234 3.114 0.121
42 H14 H H14 N N N 0 0.841 0.843 0.324
43 H15 H H15 N N N 0 1.049 -2.083 0.907
44 H16 H H16 N N N 0 2.764 0.299 1.595
45 H17 H H17 N N N 0 6.781 -2.209 -0.166