Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : T6O    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 S O S doub 1.42 N N
2 O C3 O C doub 1.21 N N
3 O1 S O S doub 1.42 N N
4 S O3 S O sing 1.52 N N
5 S N S N sing 1.66 N N
6 C3 N C N sing 1.35 N N
7 C3 C2 C C sing 1.51 N N
8 N C1 N C sing 1.46 N N
9 C2 C1 C C sing 1.53 N N
10 C2 N1 C N sing 1.46 N N
11 C1 C C C sing 1.53 N N
12 O4 C4 O C doub 1.22 N N
13 N1 C4 N C sing 1.35 N N
14 C7 C6 C C sing 1.53 N N
15 C4 C5 C C sing 1.48 N N
16 O5 N2 O N sing 1.42 N N
17 O5 C6 O C sing 1.43 N N
18 N2 C5 N C doub 1.3 Z N
19 C6 C8 C C sing 1.53 N N
20 C6 C9 C C sing 1.51 N N
21 C5 C10 C C sing 1.48 N N
22 N3 C10 N C sing 1.33 N Y
23 N3 C12 N C doub 1.3 N Y
24 C10 C11 C C doub 1.35 N Y
25 O7 C9 O C doub 1.21 N N
26 C9 O6 C O sing 1.34 N N
27 C12 N4 C N sing 1.38 N N
28 C12 S1 C S sing 1.76 N Y
29 C11 S1 C S sing 1.76 N Y
30 C H1 C H sing 1.09 N N
31 C H2 C H sing 1.09 N N
32 C H3 C H sing 1.09 N N
33 O6 H4 O H sing 0.97 N N
34 C7 H5 C H sing 1.09 N N
35 C7 H6 C H sing 1.09 N N
36 C7 H7 C H sing 1.09 N N
37 C8 H8 C H sing 1.09 N N
38 C8 H9 C H sing 1.09 N N
39 C8 H10 C H sing 1.09 N N
40 N4 H11 N H sing 0.97 N N
41 N4 H12 N H sing 0.97 N N
42 C11 H13 C H sing 1.08 N N
43 N1 H14 N H sing 0.97 N N
44 C2 H15 C H sing 1.09 N N
45 C1 H16 C H sing 1.09 N N
46 O3 H17 O H sing 0.97 N N