Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V28

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O15 O O1 N N N 0 -4.625 1.828 -0.228
2 S13 S S1 N N N 0 -3.708 1.504 0.808
3 O14 O O2 N N N 0 -3.977 1.732 2.184
4 C10 C C1 N Y N 0 -3.364 -0.216 0.646
5 C11 C C2 N Y N 0 -2.42 -0.81 1.466
6 C12 C C3 N Y N 0 -2.147 -2.158 1.344
7 C07 C C4 N Y N 0 -2.823 -2.92 0.394
8 C01 C C5 N Y N 0 -2.534 -4.369 0.259
9 C02 C C6 N Y N 0 -3.21 -5.132 -0.691
10 C03 C C7 N Y N 0 -2.937 -6.479 -0.812
11 C04 C C8 N Y N 0 -1.994 -7.073 0.007
12 C05 C C9 N Y N 0 -1.319 -6.32 0.952
13 C06 C C10 N Y N 0 -1.581 -4.971 1.078
14 C08 C C11 N Y N 0 -3.773 -2.317 -0.428
15 C09 C C12 N Y N 0 -4.042 -0.97 -0.295
16 N16 N N1 N N N 0 -2.308 2.318 0.464
17 C17 C C13 R N N 0 -2.119 2.927 -0.856
18 C18 C C14 N N N 0 -2.61 1.98 -1.92
19 O19 O O3 N N N 0 -3.29 1.028 -1.616
20 O20 O O4 N N N 0 -2.292 2.192 -3.207
21 C21 C C15 N N N 0 -2.91 4.234 -0.932
22 C22 C C16 N N N 0 -4.406 3.932 -0.825
23 C23 C C17 N N N 0 -2.491 5.152 0.218
24 C24 C C18 N N N 0 -1.257 2.431 1.479
25 C25 C C19 N Y N 0 -0.073 1.592 1.072
26 N26 N N2 N Y N 0 0.085 0.279 1.275
27 N27 N N3 N Y N 0 1.22 -0.083 0.789
28 C29 C C20 N Y N 0 1.036 2.017 0.423
29 N28 N N4 N Y N 0 1.824 0.928 0.271
30 C30 C C21 R N N 0 3.138 0.904 -0.376
31 C31 C C22 R N N 0 4.169 0.304 0.583
32 N40 N N5 N N N 0 4.283 1.153 1.772
33 C41 C C23 N N N 0 4.706 0.625 2.938
34 C42 C C24 N N N 0 4.823 1.498 4.161
35 O43 O O5 N N N 0 4.992 -0.551 3.003
36 C33 C C27 S N N 0 5.378 -0.599 -1.404
37 O35 O O6 N N N 0 3.071 0.106 -1.56
38 C34 C C25 R N N 0 4.3 0.036 -2.287
39 C36 C C26 N N N 0 4.102 -0.816 -3.542
40 O37 O O7 N N N 0 3.181 -0.165 -4.419
41 O38 O O8 N N N 0 6.621 -0.617 -2.107
42 C32 C C28 R N N 0 5.527 0.226 -0.122
43 O39 O O9 N N N 0 6.479 -0.4 0.741
44 H1 H H1 N N N 0 -1.897 -0.218 2.202
45 H2 H H2 N N N 0 -1.41 -2.62 1.984
46 H3 H H3 N N N 0 -3.947 -4.669 -1.331
47 H4 H H4 N N N 0 -3.461 -7.071 -1.548
48 H5 H H5 N N N 0 -1.783 -8.127 -0.091
49 H6 H H6 N N N 0 -0.581 -6.788 1.586
50 H7 H H7 N N N 0 -1.054 -4.385 1.816
51 H8 H H8 N N N 0 -4.299 -2.903 -1.167
52 H9 H H9 N N N 0 -4.777 -0.501 -0.932
53 H10 H H10 N N N 0 -1.06 3.132 -1.013
54 H11 H H11 N N N 0 -2.63 1.558 -3.853
55 H12 H H12 N N N 0 -2.706 4.727 -1.883
56 H13 H H13 N N N 0 -4.976 4.826 -1.08
57 H14 H H14 N N N 0 -4.665 3.128 -1.514
58 H15 H H15 N N N 0 -4.643 3.628 0.194
59 H16 H H16 N N N 0 -1.437 5.408 0.113
60 H17 H H17 N N N 0 -3.09 6.062 0.194
61 H18 H H18 N N N 0 -2.648 4.639 1.167
62 H19 H H19 N N N 0 -0.95 3.473 1.57
63 H20 H H20 N N N 0 -1.64 2.079 2.437
64 H21 H H21 N N N 0 1.249 3.024 0.095
65 H22 H H22 N N N 0 3.433 1.92 -0.639
66 H23 H H23 N N N 0 3.854 -0.697 0.878
67 H24 H H24 N N N 0 4.054 2.094 1.72
68 H25 H H25 N N N 0 4.525 2.516 3.911
69 H26 H H26 N N N 0 4.173 1.112 4.947
70 H27 H H27 N N N 0 5.855 1.497 4.511
71 H28 H H28 N N N 0 4.61 1.041 -2.574
72 H29 H H29 N N N 0 5.058 -0.943 -4.049
73 H30 H H30 N N N 0 3.707 -1.792 -3.261
74 H31 H H31 N N N 0 3.008 -0.649 -5.238
75 H32 H H32 N N N 0 5.087 -1.618 -1.15
76 H33 H H33 N N N 0 6.598 -1.119 -2.934
77 H34 H H34 N N N 0 5.866 1.231 -0.372
78 H35 H H35 N N N 0 7.363 -0.482 0.358