Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : V28    

Bonds between two atoms of the molecule

Total Number of Bonds: 81


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C23 C21 C C sing 1.53 N N
2 O19 C18 O C doub 1.21 N N
3 O20 C18 O C sing 1.34 N N
4 C18 C17 C C sing 1.51 N N
5 C42 C41 C C sing 1.51 N N
6 C21 C17 C C sing 1.53 N N
7 C21 C22 C C sing 1.53 N N
8 C17 N16 C N sing 1.47 N N
9 O43 C41 O C doub 1.21 N N
10 C41 N40 C N sing 1.35 N N
11 N26 C25 N C sing 1.34 N Y
12 N26 N27 N N doub 1.29 N Y
13 C24 C25 C C sing 1.51 N N
14 C24 N16 C N sing 1.47 N N
15 C05 C06 C C doub 1.38 N Y
16 C05 C04 C C sing 1.38 N Y
17 C25 C29 C C doub 1.35 N Y
18 C06 C01 C C sing 1.39 N Y
19 N27 N28 N N sing 1.29 N Y
20 N16 S13 N S sing 1.66 N N
21 N40 C31 N C sing 1.47 N N
22 C04 C03 C C doub 1.38 N Y
23 C01 C07 C C sing 1.48 N N
24 C01 C02 C C doub 1.39 N Y
25 C07 C12 C C doub 1.39 N Y
26 C07 C08 C C sing 1.39 N Y
27 C12 C11 C C sing 1.38 N Y
28 C08 C09 C C doub 1.38 N Y
29 C29 N28 C N sing 1.35 N Y
30 N28 C30 N C sing 1.46 N N
31 C09 C10 C C sing 1.38 N Y
32 C11 C10 C C doub 1.38 N Y
33 C10 S13 C S sing 1.76 N N
34 C03 C02 C C sing 1.38 N Y
35 S13 O15 S O doub 1.42 N N
36 S13 O14 S O doub 1.42 N N
37 C31 C30 C C sing 1.53 N N
38 C31 C32 C C sing 1.53 N N
39 C30 O35 C O sing 1.43 N N
40 O39 C32 O C sing 1.43 N N
41 C32 C33 C C sing 1.53 N N
42 O35 C34 O C sing 1.43 N N
43 C33 C34 C C sing 1.53 N N
44 C33 O38 C O sing 1.43 N N
45 C34 C36 C C sing 1.53 N N
46 C36 O37 C O sing 1.43 N N
47 C11 H1 C H sing 1.08 N N
48 C12 H2 C H sing 1.08 N N
49 C02 H3 C H sing 1.08 N N
50 C03 H4 C H sing 1.08 N N
51 C04 H5 C H sing 1.08 N N
52 C05 H6 C H sing 1.08 N N
53 C06 H7 C H sing 1.08 N N
54 C08 H8 C H sing 1.08 N N
55 C09 H9 C H sing 1.08 N N
56 C17 H10 C H sing 1.09 N N
57 O20 H11 O H sing 0.97 N N
58 C21 H12 C H sing 1.09 N N
59 C22 H13 C H sing 1.09 N N
60 C22 H14 C H sing 1.09 N N
61 C22 H15 C H sing 1.09 N N
62 C23 H16 C H sing 1.09 N N
63 C23 H17 C H sing 1.09 N N
64 C23 H18 C H sing 1.09 N N
65 C24 H19 C H sing 1.09 N N
66 C24 H20 C H sing 1.09 N N
67 C29 H21 C H sing 1.08 N N
68 C30 H22 C H sing 1.09 N N
69 C31 H23 C H sing 1.09 N N
70 N40 H24 N H sing 0.97 N N
71 C42 H25 C H sing 1.09 N N
72 C42 H26 C H sing 1.09 N N
73 C42 H27 C H sing 1.09 N N
74 C34 H28 C H sing 1.09 N N
75 C36 H29 C H sing 1.09 N N
76 C36 H30 C H sing 1.09 N N
77 O37 H31 O H sing 0.97 N N
78 C33 H32 C H sing 1.09 N N
79 O38 H33 O H sing 0.97 N N
80 C32 H34 C H sing 1.09 N N
81 O39 H35 O H sing 0.97 N N