Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V9M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 2.695 1.354 -0.089
2 CA C CA S N N 0 2.735 -0.081 0.371
3 CB C CB N N N 0 3.995 -0.756 -0.173
4 CG1 C CG1 N N N 0 5.232 -0.107 0.451
5 N N N N N N 1 1.547 -0.788 -0.126
6 C40 C C40 N N N 0 0.337 -0.089 0.327
7 C42 C C42 N N N 0 -0.9 -0.888 -0.092
8 C43 C C43 R N N 0 -2.16 -0.161 0.379
9 C44 C C44 N N N 0 -3.397 -0.892 -0.145
10 C45 C C45 N N N 0 -4.578 0.079 -0.203
11 C46 C C46 N N N 0 -4.253 1.22 -1.17
12 C47 C C47 N N N 0 -5.825 -0.662 -0.689
13 C48 C C48 N N N 0 -4.836 0.652 1.192
14 C49 C C49 N N N 0 -2.193 -0.136 1.909
15 O O O N N N 0 1.868 1.706 -0.897
16 C54 C C54 N N N 0 1.574 -0.82 -1.594
17 CG2 C CG2 N N N 0 3.968 -2.245 0.178
18 OXT O OXT N N Y 0 3.574 2.241 0.401
19 HA H HA N N N 0 2.748 -0.112 1.461
20 HB H HB N N N 0 4.031 -0.639 -1.256
21 HG13 H HG13 N N N 0 5.196 -0.224 1.534
22 HG11 H HG11 N N N 0 6.13 -0.588 0.064
23 HG12 H HG12 N N N 0 5.251 0.954 0.201
24 H H HN N N N 0 1.544 -1.732 0.231
25 H401 H H401 N N N 0 0.357 0.007 1.412
26 H402 H H402 N N N 0 0.299 0.902 -0.125
27 H422 H H422 N N N 0 -0.92 -0.984 -1.177
28 H421 H H421 N N N 0 -0.862 -1.879 0.36
29 H431 H H431 N N N 0 -2.154 0.861 -0.001
30 H442 H H442 N N N 0 -3.195 -1.277 -1.145
31 H441 H H441 N N N 0 -3.64 -1.72 0.521
32 H463 H H463 N N N 0 -4.069 0.812 -2.164
33 H462 H H462 N N N 0 -5.095 1.912 -1.211
34 H461 H H461 N N N 0 -3.365 1.748 -0.824
35 H472 H H472 N N N 0 -6.056 -1.474 0.0
36 H473 H H473 N N N 0 -6.666 0.03 -0.73
37 H471 H H471 N N N 0 -5.641 -1.069 -1.683
38 H482 H H482 N N N 0 -4.022 1.323 1.466
39 H483 H H483 N N N 0 -5.777 1.203 1.19
40 H481 H H481 N N N 0 -4.894 -0.163 1.914
41 H493 H H493 N N N 0 -3.139 0.289 2.245
42 H491 H H491 N N N 0 -2.095 -1.152 2.291
43 H492 H H492 N N N 0 -1.369 0.474 2.28
44 H542 H H542 N N N 0 0.654 -1.271 -1.965
45 H543 H H543 N N N 0 1.661 0.197 -1.978
46 H541 H H541 N N N 0 2.428 -1.408 -1.929
47 HG21 H HG21 N N N 0 3.049 -2.691 -0.201
48 HG23 H HG23 N N N 0 4.826 -2.741 -0.276
49 HG22 H HG22 N N N 0 4.011 -2.364 1.261
50 HXT H HXT N N Y 0 3.51 3.149 0.076