Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : V9M    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C54 N C N sing 1.47 N N
2 O C O C doub 1.21 N N
3 C CA C C sing 1.51 N N
4 N CA N C sing 1.47 N N
5 N C40 N C sing 1.47 N N
6 CA CB C C sing 1.53 N N
7 C40 C42 C C sing 1.53 N N
8 C49 C43 C C sing 1.53 N N
9 C42 C43 C C sing 1.53 N N
10 C47 C45 C C sing 1.53 N N
11 CB CG2 C C sing 1.53 N N
12 CB CG1 C C sing 1.53 N N
13 C43 C44 C C sing 1.53 N N
14 C45 C44 C C sing 1.53 N N
15 C45 C46 C C sing 1.53 N N
16 C45 C48 C C sing 1.53 N N
17 C OXT C O sing 1.34 N N
18 CA HA C H sing 1.09 N N
19 CB HB C H sing 1.09 N N
20 CG1 HG13 C H sing 1.09 N N
21 CG1 HG11 C H sing 1.09 N N
22 CG1 HG12 C H sing 1.09 N N
23 N H N H sing 1.01 N N
24 C40 H401 C H sing 1.09 N N
25 C40 H402 C H sing 1.09 N N
26 C42 H422 C H sing 1.09 N N
27 C42 H421 C H sing 1.09 N N
28 C43 H431 C H sing 1.09 N N
29 C44 H442 C H sing 1.09 N N
30 C44 H441 C H sing 1.09 N N
31 C46 H463 C H sing 1.09 N N
32 C46 H462 C H sing 1.09 N N
33 C46 H461 C H sing 1.09 N N
34 C47 H472 C H sing 1.09 N N
35 C47 H473 C H sing 1.09 N N
36 C47 H471 C H sing 1.09 N N
37 C48 H482 C H sing 1.09 N N
38 C48 H483 C H sing 1.09 N N
39 C48 H481 C H sing 1.09 N N
40 C49 H493 C H sing 1.09 N N
41 C49 H491 C H sing 1.09 N N
42 C49 H492 C H sing 1.09 N N
43 C54 H542 C H sing 1.09 N N
44 C54 H543 C H sing 1.09 N N
45 C54 H541 C H sing 1.09 N N
46 CG2 HG21 C H sing 1.09 N N
47 CG2 HG23 C H sing 1.09 N N
48 CG2 HG22 C H sing 1.09 N N
49 OXT HXT O H sing 0.97 N N