Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : VGU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 22


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 4.135 -0.361 0.001
2 C7 C C1 N N N 0 1.697 -0.641 0.001
3 C8 C C2 N N N 0 2.914 0.21 -0.001
4 O1 O O1 N N N 0 2.809 1.42 -0.004
5 C1 C C3 N Y N 0 -3.302 1.732 0.003
6 C5 C C4 N Y N 0 -4.319 -0.443 -0.003
7 C6 C C5 N N N 0 -0.586 -0.862 0.0
8 C4 C C6 N Y N 0 -3.072 -1.033 -0.001
9 C3 C C7 N Y N 0 -1.925 -0.236 -0.002
10 C2 C C8 N Y N 0 -2.05 1.155 0.005
11 O2 O O2 N N N 0 5.295 0.451 0.0
12 N N N2 N N N 0 0.518 -0.09 -0.001
13 O O O3 N N N 0 -0.481 -2.073 0.003
14 C C C9 N Y N 0 -4.434 0.936 -0.001
15 H1 H H1 N N N 0 4.219 -1.327 0.008
16 H2 H H2 N N N 0 1.79 -1.717 0.003
17 H3 H H3 N N N 0 -3.4 2.808 0.009
18 H4 H H4 N N N 0 -5.206 -1.058 -0.002
19 H5 H H5 N N N 0 -2.983 -2.11 0.002
20 H6 H H6 N N N 0 -1.167 1.777 0.012
21 H7 H H7 N N N 0 6.124 -0.048 0.002
22 H8 H H8 N N N 0 -5.413 1.393 -0.003