Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : VVN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -4.623 -0.157 0.693
2 C2 C C1 N N N 0 -4.044 1.057 0.775
3 N3 N N2 N N N 0 5.653 -1.789 2.669
4 C4 C C2 N N N 0 -3.796 3.477 0.294
5 C5 C C3 N N N 0 -4.049 -1.293 1.418
6 C6 C C4 N N N 0 -3.032 -2.007 0.525
7 C8 C C5 N Y N 0 -1.01 -2.905 -1.029
8 C9 C C6 N Y N 0 0.004 -3.394 -1.831
9 C10 C C7 N Y N 0 1.096 -2.6 -2.133
10 C11 C C8 N Y N 0 1.178 -1.314 -1.632
11 C12 C C9 N Y N 0 0.164 -0.817 -0.827
12 C13 C C10 N Y N 0 1.385 1.149 -0.558
13 C1 C C11 N N N 0 -5.83 -0.34 -0.117
14 C14 C C12 N Y N 0 1.371 2.25 -1.361
15 C15 C C13 N Y N 0 2.561 2.969 -1.578
16 C16 C C14 N Y N 0 3.712 2.579 -1.001
17 C17 C C15 N Y N 0 2.604 0.747 0.046
18 C18 C C16 N Y N 0 2.915 -0.301 0.887
19 C19 C C17 N Y N 0 4.294 -0.206 1.171
20 C20 C C18 N N N 0 5.052 -1.089 2.006
21 C21 C C19 N Y N 0 4.778 0.897 0.494
22 C3 C C20 N N N 0 -4.639 2.227 0.034
23 C7 C C21 N Y N 0 -0.934 -1.617 -0.524
24 N2 N N3 N Y N 0 3.753 1.471 -0.186
25 O1 O O1 N N N 0 -3.045 1.209 1.445
26 O2 O O2 N N N 0 -1.933 -1.133 0.261
27 O3 O O3 N N N 0 0.244 0.447 -0.334
28 H6 H H1 N N N 0 -3.784 3.692 1.362
29 H5 H H2 N N N 0 -2.777 3.307 -0.054
30 H20 H H3 N N N 0 -4.226 4.323 -0.243
31 H7 H H4 N N N 0 -3.552 -0.934 2.32
32 H8 H H5 N N N 0 -4.842 -1.988 1.693
33 H10 H H6 N N N 0 -2.67 -2.902 1.031
34 H9 H H7 N N N 0 -3.508 -2.287 -0.415
35 H11 H H8 N N N 0 -1.863 -3.526 -0.799
36 H12 H H9 N N N 0 -0.056 -4.398 -2.224
37 H13 H H10 N N N 0 1.886 -2.985 -2.76
38 H14 H H11 N N N 0 2.032 -0.696 -1.868
39 H2 H H12 N N N 0 -5.548 -0.608 -1.135
40 H1 H H13 N N N 0 -6.438 -1.136 0.312
41 H3 H H14 N N N 0 -6.402 0.588 -0.131
42 H15 H H15 N N N 0 0.451 2.569 -1.829
43 H16 H H16 N N N 0 2.55 3.841 -2.215
44 H17 H H17 N N N 0 4.616 3.144 -1.179
45 H18 H H18 N N N 0 2.233 -1.052 1.258
46 H19 H H19 N N N 0 5.8 1.244 0.505
47 H21 H H20 N N N 0 -4.65 2.012 -1.035
48 H4 H H21 N N N 0 -5.658 2.397 0.381