Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : Y5M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C01 C C1 N N N 0 -1.504 3.835 0.947
2 C02 C C2 N Y N 0 -1.882 2.432 0.546
3 C04 C C3 N Y N 0 -3.532 0.91 0.037
4 C05 C C4 N Y N 0 -2.568 -0.055 -0.167
5 C06 C C5 N N N 0 -3.219 -1.361 -0.557
6 C12 C C10 N Y N 0 1.525 1.0 -0.563
7 C07 C C6 N N N 0 -4.654 -0.983 -0.986
8 C08 C C7 N N N 0 -4.904 0.321 -0.204
9 C09 C C8 N Y N 0 -1.227 0.295 0.002
10 C11 C C9 N Y N 0 1.13 -0.268 -0.175
11 C13 C C11 N Y N 0 2.866 1.339 -0.542
12 C14 C C12 N Y N 0 3.813 0.41 -0.134
13 C16 C C13 N N N 0 5.464 2.074 -0.533
14 C17 C C14 N Y N 0 3.421 -0.861 0.257
15 C18 C C15 N Y N 0 2.079 -1.205 0.238
16 C20 C C16 N N N 0 0.417 -2.914 0.365
17 C21 C C17 N N N 0 -0.543 -2.059 -0.421
18 N03 N N1 N Y N 0 -3.155 2.133 0.389
19 N10 N N2 N N N 0 -0.224 -0.642 -0.191
20 N19 N N3 N N N 0 1.661 -2.479 0.639
21 N23 N N4 N Y N 0 -0.929 1.542 0.357
22 O15 O O1 N N N 0 5.13 0.748 -0.117
23 O22 O O2 N N N 0 0.062 -4.005 0.759
24 H1 H H1 N N N 0 -1.472 3.905 2.035
25 H2 H H2 N N N 0 -0.523 4.078 0.538
26 H3 H H3 N N N 0 -2.243 4.535 0.559
27 H4 H H4 N N N 0 -2.686 -1.823 -1.387
28 H5 H H5 N N N 0 -3.246 -2.035 0.299
29 H6 H H6 N N N 0 -4.702 -0.798 -2.059
30 H7 H H7 N N N 0 -5.363 -1.757 -0.693
31 H8 H H8 N N N 0 -5.387 0.105 0.748
32 H9 H H9 N N N 0 -5.516 1.004 -0.793
33 H10 H H10 N N N 0 0.789 1.722 -0.882
34 H11 H H11 N N N 0 3.177 2.328 -0.844
35 H12 H H12 N N N 0 6.544 2.212 -0.472
36 H13 H H13 N N N 0 5.136 2.227 -1.561
37 H14 H H14 N N N 0 4.969 2.795 0.118
38 H15 H H15 N N N 0 4.16 -1.582 0.573
39 H16 H H16 N N N 0 -0.446 -2.282 -1.483
40 H17 H H17 N N N 0 -1.564 -2.264 -0.097
41 H18 H H18 N N N 0 2.275 -3.056 1.12