Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y5M    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O15 C16 O C sing 1.43 N N
2 O15 C14 O C sing 1.36 N N
3 C17 C14 C C doub 1.39 N Y
4 C17 C18 C C sing 1.39 N Y
5 C14 C13 C C sing 1.39 N Y
6 N19 C18 N C sing 1.4 N N
7 N19 C20 N C sing 1.35 N N
8 C18 C11 C C doub 1.4 N Y
9 C13 C12 C C doub 1.38 N Y
10 O22 C20 O C doub 1.21 N N
11 C20 C21 C C sing 1.51 N N
12 C11 C12 C C sing 1.38 N Y
13 C11 N10 C N sing 1.4 N N
14 C06 C07 C C sing 1.54 N N
15 C06 C05 C C sing 1.51 N N
16 N10 C21 N C sing 1.47 N N
17 N10 C09 N C sing 1.39 N N
18 C07 C08 C C sing 1.54 N N
19 C05 C09 C C doub 1.4 N Y
20 C05 C04 C C sing 1.38 N Y
21 C09 N23 C N sing 1.33 N Y
22 C08 C04 C C sing 1.51 N N
23 C04 N03 C N doub 1.33 N Y
24 N23 C02 N C doub 1.32 N Y
25 N03 C02 N C sing 1.32 N Y
26 C02 C01 C C sing 1.51 N N
27 C01 H1 C H sing 1.09 N N
28 C01 H2 C H sing 1.09 N N
29 C01 H3 C H sing 1.09 N N
30 C06 H4 C H sing 1.09 N N
31 C06 H5 C H sing 1.09 N N
32 C07 H6 C H sing 1.09 N N
33 C07 H7 C H sing 1.09 N N
34 C08 H8 C H sing 1.09 N N
35 C08 H9 C H sing 1.09 N N
36 C12 H10 C H sing 1.08 N N
37 C13 H11 C H sing 1.08 N N
38 C16 H12 C H sing 1.09 N N
39 C16 H13 C H sing 1.09 N N
40 C16 H14 C H sing 1.09 N N
41 C17 H15 C H sing 1.08 N N
42 C21 H16 C H sing 1.09 N N
43 C21 H17 C H sing 1.09 N N
44 N19 H18 N H sing 0.97 N N