Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YA4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1' C C1 N N N 0 3.204 1.489 -0.247
2 C2' C C2 S N N 0 3.719 0.218 0.465
3 C3' C C3 S N N 0 2.501 -0.734 0.462
4 C4' C C4 R N N 0 1.395 0.075 -0.252
5 C5' C C5 N N N 0 0.035 -0.198 0.395
6 O2' O O1 N N N 0 4.806 -0.357 -0.262
7 O3' O O2 N N N 0 2.8 -1.926 -0.267
8 O4' O O3 N N N 0 1.771 1.457 -0.068
9 O5' O O4 N N N 0 -0.988 0.465 -0.35
10 OP1 O O5 N N N 0 -2.719 0.836 1.449
11 P P P1 N N N 0 -2.547 0.395 0.047
12 SP3 S S1 N N N 0 -3.239 -1.598 -0.157
13 H1' H H1 N N N 0 3.624 2.381 0.217
14 H1'' H H2 N N N 0 3.454 1.459 -1.307
15 H2' H H3 N N N 0 4.021 0.449 1.487
16 H3' H H4 N N N 0 2.203 -0.976 1.482
17 H4' H H5 N N N 0 1.367 -0.175 -1.312
18 H5' H H6 N N N 0 -0.156 -1.271 0.399
19 H5'' H H7 N N N 0 0.039 0.174 1.419
20 HO2' H H8 N N N 0 5.576 0.223 -0.343
21 HO3' H H9 N N Y 0 3.529 -2.441 0.104
22 HSP3 H H11 N N N 0 -4.532 -1.507 0.201
23 OP3 O OP3 N N Y 0 -3.392 1.359 -0.927
24 HOP3 H H10 N N Y 0 -3.326 1.128 -1.863