Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YA4    

Bonds between two atoms of the molecule

Total Number of Bonds: 24


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2' C2' O C sing 1.43 N N
2 C2' C1' C C sing 1.55 N N
3 C2' C3' C C sing 1.55 N N
4 C1' O4' C O sing 1.44 N N
5 C3' O3' C O sing 1.43 N N
6 C3' C4' C C sing 1.55 N N
7 O4' C4' O C sing 1.44 N N
8 C4' C5' C C sing 1.53 N N
9 C5' O5' C O sing 1.43 N N
10 O5' P O P sing 1.61 N N
11 SP3 P S P sing 2.12 N N
12 P OP1 P O doub 1.48 N N
13 C1' H1' C H sing 1.09 N N
14 C1' H1'' C H sing 1.09 N N
15 C2' H2' C H sing 1.09 N N
16 C3' H3' C H sing 1.09 N N
17 C4' H4' C H sing 1.09 N N
18 C5' H5' C H sing 1.09 N N
19 C5' H5'' C H sing 1.09 N N
20 O2' HO2' O H sing 0.97 N N
21 O3' HO3' O H sing 0.97 N N
22 SP3 HSP3 S H sing 1.34 N N
23 P OP3 P O sing 1.61 N N
24 OP3 HOP3 O H sing 0.97 N N