Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YJO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 R N N 0 0.898 -1.621 -0.973
2 C03 C C2 S N N 0 0.915 -0.138 -1.355
3 C07 C C3 N Y N 0 4.205 1.16 -0.687
4 C10 C C4 N Y N 0 6.389 0.369 0.8
5 C11 C C5 N Y N 0 6.036 -0.264 1.986
6 C12 C C6 N Y N 0 6.712 -1.399 2.388
7 C13 C C7 N Y N 0 7.738 -1.906 1.612
8 C14 C C8 N Y N 0 8.092 -1.279 0.432
9 C15 C C9 N Y N 0 7.421 -0.144 0.023
10 C17 C C10 N Y N 0 2.97 0.804 -0.244
11 C18 C C11 R N N 0 0.078 0.649 -0.342
12 C20 C C12 S N N 0 -1.341 0.074 -0.308
13 C22 C C13 S N N 0 -3.979 0.249 0.727
14 C23 C C14 R N N 0 -4.912 0.806 1.805
15 C25 C C15 S N N 0 -6.324 0.254 1.582
16 C27 C C16 S N N 0 -6.785 0.621 0.168
17 C29 C C17 R N N 0 -5.78 0.072 -0.847
18 C30 C C18 N N N 0 -6.202 0.485 -2.258
19 C34 C C19 R N N 0 -0.552 -2.11 -0.915
20 C35 C C20 N N N 0 -0.579 -3.576 -0.476
21 N04 N N1 N Y N 0 2.295 0.356 -1.339
22 N05 N N2 N Y N 0 3.077 0.441 -2.357
23 N06 N N3 N Y N 0 4.218 0.919 -2.006
24 O01 O O1 N N N 0 1.511 -1.792 0.307
25 O09 O O2 N N N 0 6.455 2.409 -0.769
26 O19 O O3 N N N 0 0.028 2.023 -0.728
27 O24 O O4 N N N 0 -4.442 0.408 3.095
28 O26 O O5 N N N 0 -7.217 0.826 2.54
29 O28 O O6 N N N 0 -8.073 0.051 -0.076
30 O31 O O7 N N N 0 -5.33 -0.122 -3.214
31 O32 O O8 N N N 0 -4.483 0.6 -0.564
32 O33 O O9 N N N 0 -1.283 -1.315 0.023
33 O36 O O10 N N N 0 -1.92 -4.065 -0.535
34 S08 S S1 R N N 1 5.525 1.814 0.279
35 S21 S S2 N N N 0 -2.32 0.953 0.94
36 H021 H H1 N N N 0 1.447 -2.196 -1.719
37 H031 H H2 N N N 0 0.493 -0.013 -2.352
38 H111 H H3 N N N 0 5.235 0.132 2.592
39 H121 H H4 N N N 0 6.438 -1.892 3.309
40 H131 H H5 N N N 0 8.265 -2.794 1.93
41 H141 H H6 N N N 0 8.895 -1.677 -0.171
42 H151 H H7 N N N 0 7.695 0.343 -0.901
43 H171 H H8 N N N 0 2.6 0.865 0.768
44 H181 H H9 N N N 0 0.528 0.564 0.647
45 H201 H H10 N N N 0 -1.805 0.195 -1.287
46 H221 H H11 N N N 0 -3.928 -0.836 0.815
47 H231 H H12 N N N 0 -4.931 1.894 1.744
48 H251 H H13 N N N 0 -6.313 -0.83 1.694
49 H271 H H14 N N N 0 -6.843 1.705 0.074
50 H291 H H15 N N N 0 -5.752 -1.016 -0.78
51 H301 H H16 N N N 0 -7.226 0.159 -2.441
52 H302 H H17 N N N 0 -6.145 1.569 -2.352
53 H341 H H18 N N N 0 -1.006 -2.017 -1.902
54 H352 H H19 N N N 0 0.053 -4.166 -1.14
55 H351 H H20 N N N 0 -0.207 -3.656 0.545
56 H011 H H21 N N N 0 1.533 -2.709 0.614
57 H1 H H22 N N N 0 7.249 2.82 -0.402
58 H191 H H23 N N N 0 -0.487 2.582 -0.13
59 H241 H H24 N N N 0 -3.55 0.719 3.302
60 H261 H H25 N N N 0 -6.98 0.639 3.459
61 H281 H H26 N N N 0 -8.759 0.352 0.535
62 H311 H H27 N N N 0 -5.54 0.096 -4.132
63 H361 H H28 N N N 0 -2.013 -4.99 -0.269