Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YJO    

Bonds between two atoms of the molecule

Total Number of Bonds: 66


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O31 C30 O C sing 1.43 N N
2 C30 C29 C C sing 1.53 N N
3 C29 O32 C O sing 1.43 N N
4 C29 C27 C C sing 1.53 N N
5 O32 C22 O C sing 1.43 N N
6 O19 C18 O C sing 1.43 N N
7 N05 N06 N N doub 1.29 N Y
8 N05 N04 N N sing 1.29 N Y
9 C12 C13 C C doub 1.38 N Y
10 C12 C11 C C sing 1.38 N Y
11 O28 C27 O C sing 1.43 N N
12 N06 C07 N C sing 1.34 N Y
13 C13 C14 C C sing 1.38 N Y
14 C03 C18 C C sing 1.53 N N
15 C03 N04 C N sing 1.47 N N
16 C03 C02 C C sing 1.53 N N
17 C27 C25 C C sing 1.53 N N
18 C20 C18 C C sing 1.53 N N
19 C20 S21 C S sing 1.81 N N
20 C20 O33 C O sing 1.43 N N
21 N04 C17 N C sing 1.36 N Y
22 C11 C10 C C doub 1.39 N Y
23 C22 S21 C S sing 1.81 N N
24 C22 C23 C C sing 1.53 N N
25 C34 C02 C C sing 1.53 N N
26 C34 O33 C O sing 1.43 N N
27 C34 C35 C C sing 1.53 N N
28 C02 O01 C O sing 1.43 N N
29 C14 C15 C C doub 1.38 N Y
30 C07 C17 C C doub 1.36 N Y
31 C07 S08 C S sing 1.76 N N
32 C10 C15 C C sing 1.39 N Y
33 C10 S08 C S sing 1.76 N N
34 O36 C35 O C sing 1.43 N N
35 C25 C23 C C sing 1.53 N N
36 C25 O26 C O sing 1.43 N N
37 C23 O24 C O sing 1.43 N N
38 S08 O09 S O sing 1.52 N N
39 C02 H021 C H sing 1.09 N N
40 C03 H031 C H sing 1.09 N N
41 C11 H111 C H sing 1.08 N N
42 C12 H121 C H sing 1.08 N N
43 C13 H131 C H sing 1.08 N N
44 C14 H141 C H sing 1.08 N N
45 C15 H151 C H sing 1.08 N N
46 C17 H171 C H sing 1.08 N N
47 C18 H181 C H sing 1.09 N N
48 C20 H201 C H sing 1.09 N N
49 C22 H221 C H sing 1.09 N N
50 C23 H231 C H sing 1.09 N N
51 C25 H251 C H sing 1.09 N N
52 C27 H271 C H sing 1.09 N N
53 C29 H291 C H sing 1.09 N N
54 C30 H301 C H sing 1.09 N N
55 C30 H302 C H sing 1.09 N N
56 C34 H341 C H sing 1.09 N N
57 C35 H352 C H sing 1.09 N N
58 C35 H351 C H sing 1.09 N N
59 O01 H011 O H sing 0.97 N N
60 O09 H1 O H sing 0.97 N N
61 O19 H191 O H sing 0.97 N N
62 O24 H241 O H sing 0.97 N N
63 O26 H261 O H sing 0.97 N N
64 O28 H281 O H sing 0.97 N N
65 O31 H311 O H sing 0.97 N N
66 O36 H361 O H sing 0.97 N N