Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ZIM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -2.06 0.009 0.015
2 N3 N N2 N N N 0 2.585 -0.993 0.25
3 C4 C C1 N Y N 0 -5.429 -1.285 0.723
4 C5 C C2 N Y N 0 -4.057 -1.233 0.563
5 C6 C C3 N Y N 0 -3.449 -0.046 0.178
6 C7 C C4 N N N 0 -1.37 -1.113 -0.271
7 C8 C C5 N N N 0 0.741 -2.274 -0.706
8 C10 C C6 N N N 0 1.804 0.236 0.446
9 C13 C C7 N Y N 0 4.617 0.348 0.123
10 C15 C C8 N Y N 0 6.176 1.93 0.057
11 CL1 CL CL1 N N N 0 -3.466 2.576 -0.52
12 C1 C C9 N Y N 0 -4.222 1.087 -0.044
13 C2 C C10 N Y N 0 -5.593 1.029 0.118
14 C3 C C11 N Y N 0 -6.196 -0.157 0.496
15 O1 O O1 N N N 0 -1.944 -2.183 -0.322
16 N2 N N3 N N N 0 -0.043 -1.048 -0.5
17 C9 C C12 N N N 0 1.894 -2.289 0.306
18 C11 C C13 N N N 0 0.648 0.248 -0.562
19 C12 C C14 N N N 0 3.911 -0.933 0.017
20 O2 O O2 N N N 0 4.523 -1.941 -0.282
21 C14 C C15 N Y N 0 5.927 0.571 -0.19
22 C16 C C16 N Y N 0 5.021 2.471 0.504
23 O3 O O3 N Y N 0 4.084 1.515 0.543
24 H5 H H1 N N N 0 -1.594 0.855 0.104
25 H3 H H2 N N N 0 -5.903 -2.208 1.022
26 H4 H H3 N N N 0 -3.46 -2.115 0.737
27 H6 H H4 N N N 0 0.103 -3.143 -0.546
28 H7 H H5 N N N 0 1.144 -2.297 -1.718
29 H10 H H6 N N N 0 1.405 0.258 1.461
30 H11 H H7 N N N 0 2.441 1.105 0.282
31 H15 H H8 N N N 0 7.113 2.447 -0.085
32 H1 H H11 N N N 0 -6.195 1.909 -0.054
33 H2 H H12 N N N 0 -7.268 -0.2 0.622
34 H9 H H13 N N N 0 2.592 -3.087 0.054
35 H8 H H14 N N N 0 1.498 -2.449 1.309
36 H13 H H15 N N N 0 -0.05 1.046 -0.309
37 H12 H H16 N N N 0 1.04 0.406 -1.566
38 H14 H H17 N N N 0 6.635 -0.158 -0.556
39 H16 H H18 N N N 0 4.877 3.504 0.784