Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6MS    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O20 P18 O P doub 1.48 N N
2 O21 P18 O P sing 1.61 N N
3 P18 C17 P C sing 1.82 N N
4 P18 O19 P O sing 1.61 N N
5 C16 C17 C C sing 1.53 N N
6 C16 C15 C C sing 1.53 N N
7 C14 C15 C C sing 1.53 N N
8 C14 C13 C C sing 1.53 N N
9 C12 C13 C C sing 1.53 N N
10 C12 N11 C N sing 1.47 N N
11 N11 C10 N C sing 1.36 N Y
12 N11 C07 N C sing 1.37 N Y
13 C10 N09 C N doub 1.3 N Y
14 C07 N06 C N sing 1.34 N N
15 C07 C08 C C doub 1.4 N Y
16 N06 C04 N C doub 1.31 N N
17 N09 C08 N C sing 1.36 N Y
18 C08 C02 C C sing 1.41 N N
19 C04 N05 C N sing 1.37 N N
20 C04 N03 C N sing 1.36 N N
21 C02 N03 C N sing 1.35 N N
22 C02 O01 C O doub 1.22 N N
23 C12 H1 C H sing 1.09 N N
24 C12 H2 C H sing 1.09 N N
25 N05 H3 N H sing 0.97 N N
26 N05 H4 N H sing 0.97 N N
27 C10 H6 C H sing 1.08 N N
28 C13 H7 C H sing 1.09 N N
29 C13 H8 C H sing 1.09 N N
30 C14 H9 C H sing 1.09 N N
31 C14 H10 C H sing 1.09 N N
32 C15 H11 C H sing 1.09 N N
33 C15 H12 C H sing 1.09 N N
34 C16 H13 C H sing 1.09 N N
35 C16 H14 C H sing 1.09 N N
36 C17 H15 C H sing 1.09 N N
37 C17 H16 C H sing 1.09 N N
38 O19 H17 O H sing 0.97 N N
39 O21 H18 O H sing 0.97 N N
40 N03 H5 N H sing 0.97 N N