Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
8LQ
Bonds between two atoms of the molecule
Total Number of Bonds: 51
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
OAD
PBC
O
P
doub
1.48
N
N
2
OAH
PBC
O
P
sing
1.61
N
N
3
PBC
OAQ
P
O
sing
1.61
N
N
4
PBC
O5'
P
O
sing
1.61
N
N
5
OAQ
CAS
O
C
sing
1.34
N
N
6
O5'
C5'
O
C
sing
1.43
N
N
7
CAA
CAZ
C
C
sing
1.53
N
N
8
C5'
C4'
C
C
sing
1.53
N
N
9
CAS
OAC
C
O
doub
1.21
N
N
10
CAS
CAL
C
C
sing
1.51
N
N
11
C4'
C3'
C
C
sing
1.54
N
N
12
C4'
O4'
C
O
sing
1.44
N
N
13
O3'
C3'
O
C
sing
1.43
N
N
14
CAZ
CAL
C
C
sing
1.53
N
N
15
CAZ
OAE
C
O
sing
1.43
N
N
16
C3'
C2'
C
C
sing
1.55
N
N
17
O4'
C1'
O
C
sing
1.44
N
N
18
O2'
C2'
O
C
sing
1.43
N
N
19
C2'
C1'
C
C
sing
1.55
N
N
20
C1'
N9
C
N
sing
1.46
N
N
21
C8
N9
C
N
sing
1.36
N
Y
22
C8
N7
C
N
doub
1.3
N
Y
23
N9
C4
N
C
sing
1.37
N
Y
24
N7
C5
N
C
sing
1.35
N
Y
25
C4
C5
C
C
doub
1.41
N
Y
26
C4
N3
C
N
sing
1.33
N
Y
27
C5
C6
C
C
sing
1.41
N
Y
28
N3
C2
N
C
doub
1.32
N
Y
29
C6
N6
C
N
sing
1.38
N
N
30
C6
N1
C
N
doub
1.33
N
Y
31
C2
N1
C
N
sing
1.32
N
Y
32
C8
H1
C
H
sing
1.08
N
N
33
N6
H2
N
H
sing
0.97
N
N
34
N6
H3
N
H
sing
0.97
N
N
35
C2
H4
C
H
sing
1.08
N
N
36
CAA
H5
C
H
sing
1.09
N
N
37
CAA
H6
C
H
sing
1.09
N
N
38
CAA
H7
C
H
sing
1.09
N
N
39
CAZ
H8
C
H
sing
1.09
N
N
40
OAE
H9
O
H
sing
0.97
N
N
41
CAL
H10
C
H
sing
1.09
N
N
42
CAL
H11
C
H
sing
1.09
N
N
43
OAH
H12
O
H
sing
0.97
N
N
44
C5'
H13
C
H
sing
1.09
N
N
45
C5'
H14
C
H
sing
1.09
N
N
46
C4'
H15
C
H
sing
1.09
N
N
47
C3'
H16
C
H
sing
1.09
N
N
48
O3'
H17
O
H
sing
0.97
N
N
49
C2'
H18
C
H
sing
1.09
N
N
50
O2'
H19
O
H
sing
0.97
N
N
51
C1'
H20
C
H
sing
1.09
N
N