Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8LQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAD PBC O P doub 1.48 N N
2 OAH PBC O P sing 1.61 N N
3 PBC OAQ P O sing 1.61 N N
4 PBC O5' P O sing 1.61 N N
5 OAQ CAS O C sing 1.34 N N
6 O5' C5' O C sing 1.43 N N
7 CAA CAZ C C sing 1.53 N N
8 C5' C4' C C sing 1.53 N N
9 CAS OAC C O doub 1.21 N N
10 CAS CAL C C sing 1.51 N N
11 C4' C3' C C sing 1.54 N N
12 C4' O4' C O sing 1.44 N N
13 O3' C3' O C sing 1.43 N N
14 CAZ CAL C C sing 1.53 N N
15 CAZ OAE C O sing 1.43 N N
16 C3' C2' C C sing 1.55 N N
17 O4' C1' O C sing 1.44 N N
18 O2' C2' O C sing 1.43 N N
19 C2' C1' C C sing 1.55 N N
20 C1' N9 C N sing 1.46 N N
21 C8 N9 C N sing 1.36 N Y
22 C8 N7 C N doub 1.3 N Y
23 N9 C4 N C sing 1.37 N Y
24 N7 C5 N C sing 1.35 N Y
25 C4 C5 C C doub 1.41 N Y
26 C4 N3 C N sing 1.33 N Y
27 C5 C6 C C sing 1.41 N Y
28 N3 C2 N C doub 1.32 N Y
29 C6 N6 C N sing 1.38 N N
30 C6 N1 C N doub 1.33 N Y
31 C2 N1 C N sing 1.32 N Y
32 C8 H1 C H sing 1.08 N N
33 N6 H2 N H sing 0.97 N N
34 N6 H3 N H sing 0.97 N N
35 C2 H4 C H sing 1.08 N N
36 CAA H5 C H sing 1.09 N N
37 CAA H6 C H sing 1.09 N N
38 CAA H7 C H sing 1.09 N N
39 CAZ H8 C H sing 1.09 N N
40 OAE H9 O H sing 0.97 N N
41 CAL H10 C H sing 1.09 N N
42 CAL H11 C H sing 1.09 N N
43 OAH H12 O H sing 0.97 N N
44 C5' H13 C H sing 1.09 N N
45 C5' H14 C H sing 1.09 N N
46 C4' H15 C H sing 1.09 N N
47 C3' H16 C H sing 1.09 N N
48 O3' H17 O H sing 0.97 N N
49 C2' H18 C H sing 1.09 N N
50 O2' H19 O H sing 0.97 N N
51 C1' H20 C H sing 1.09 N N