Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GK7    

Bonds between two atoms of the molecule

Total Number of Bonds: 118


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C58 C51 C C sing 1.55 N N
2 C07 C22 C C sing 1.53 N N
3 C07 C06 C C sing 1.53 N N
4 C56 C51 C C sing 1.55 N N
5 C08 C09 C C sing 1.53 N N
6 C51 C38 C C sing 1.53 N N
7 C51 C57 C C sing 1.54 N N
8 N49 C09 N C doub 1.45 N Y
9 N49 C48 N C sing 1.47 N Y
10 C22 C06 C C sing 1.53 N N
11 C22 N23 C N sing 1.46 N N
12 C22 C26 C C sing 1.55 N N
13 C06 C05 C C sing 1.54 N N
14 C09 C10 C C sing 1.53 N Y
15 N23 C24 N C sing 1.47 N N
16 C05 C21 C C doub 1.34 Z N
17 C47 C48 C C doub 1.55 N Y
18 C47 C46 C C sing 1.53 N Y
19 C38 N39 C N sing 1.44 N N
20 C38 C36 C C sing 1.53 N N
21 O27 C26 O C doub 1.38 N N
22 O17 C16 O C doub 1.17 N N
23 C48 C41 C C sing 1.5 N Y
24 O53 C52 O C doub 1.18 N N
25 C26 N28 C N sing 1.25 N N
26 C21 C20 C C sing 1.55 N N
27 N39 C52 N C sing 1.47 N N
28 N35 C36 N C sing 1.48 N N
29 N35 C02 N C sing 1.45 N N
30 C10 O11 C O sing 1.4 N N
31 C10 N40 C N doub 1.44 N Y
32 O31 S29 O S doub 1.45 N N
33 C52 O54 C O sing 1.41 N N
34 C46 C43 C C doub 1.53 N Y
35 C36 O37 C O doub 1.18 N N
36 C16 N15 C N sing 1.49 N N
37 C16 C02 C C sing 1.52 N N
38 C14 C24 C C sing 1.54 N N
39 C14 N15 C N sing 1.32 N N
40 C14 C13 C C sing 1.6 N N
41 C24 O25 C O doub 1.18 N N
42 O11 C12 O C sing 1.46 N N
43 N28 S29 N S sing 1.71 N N
44 C20 C04 C C sing 1.55 N N
45 N15 C01 N C sing 1.65 N N
46 C41 N40 C N sing 1.47 N Y
47 C41 C42 C C doub 1.55 N Y
48 C02 C18 C C sing 1.53 N N
49 S29 O30 S O doub 1.45 N N
50 S29 C32 S C sing 1.82 N N
51 O54 C55 O C sing 1.42 N N
52 C13 C12 C C sing 1.54 N N
53 C18 C03 C C sing 1.57 N N
54 C43 C42 C C sing 1.53 N Y
55 C43 O44 C O sing 1.39 N N
56 C12 C01 C C sing 1.34 N N
57 C34 C32 C C sing 1.53 N N
58 C34 C33 C C sing 1.53 N N
59 C04 C19 C C sing 1.55 N N
60 C32 C33 C C sing 1.52 N N
61 C32 C50 C C sing 1.54 N N
62 O44 C45 O C sing 1.4 N N
63 C03 C19 C C sing 1.56 N N
64 C13 H132 C H sing 1.1 N N
65 C13 H131 C H sing 1.1 N N
66 C20 H201 C H sing 1.1 N N
67 C20 H202 C H sing 1.1 N N
68 C21 H211 C H sing 1.08 N N
69 C01 H011 C H sing 1.1 N N
70 C01 H012 C H sing 1.1 N N
71 C02 H021 C H sing 1.1 N N
72 C03 H032 C H sing 1.1 N N
73 C03 H031 C H sing 1.1 N N
74 C04 H041 C H sing 1.1 N N
75 C04 H042 C H sing 1.1 N N
76 C05 H051 C H sing 1.08 N N
77 C06 H061 C H sing 1.1 N N
78 C07 H071 C H sing 1.1 N N
79 C07 H072 C H sing 1.1 N N
80 C08 H083 C H sing 1.1 N N
81 C08 H082 C H sing 1.1 N N
82 C08 H081 C H sing 1.1 N N
83 C12 H121 C H sing 1.1 N N
84 C14 H141 C H sing 1.1 N N
85 C18 H181 C H sing 1.1 N N
86 C18 H182 C H sing 1.1 N N
87 C19 H191 C H sing 1.1 N N
88 C19 H192 C H sing 1.1 N N
89 C33 H332 C H sing 1.1 N N
90 C33 H331 C H sing 1.1 N N
91 C34 H342 C H sing 1.1 N N
92 C34 H341 C H sing 1.1 N N
93 C38 H381 C H sing 1.1 N N
94 C42 H421 C H sing 1.08 N N
95 C45 H452 C H sing 1.1 N N
96 C45 H453 C H sing 1.1 N N
97 C45 H451 C H sing 1.1 N N
98 C46 H461 C H sing 1.08 N N
99 C47 H471 C H sing 1.08 N N
100 C50 H501 C H sing 1.1 N N
101 C50 H502 C H sing 1.1 N N
102 C50 H503 C H sing 1.1 N N
103 C55 H551 C H sing 1.1 N N
104 C55 H553 C H sing 1.1 N N
105 C55 H552 C H sing 1.1 N N
106 C56 H563 C H sing 1.1 N N
107 C56 H562 C H sing 1.1 N N
108 C56 H561 C H sing 1.1 N N
109 C57 H572 C H sing 1.1 N N
110 C57 H573 C H sing 1.1 N N
111 C57 H571 C H sing 1.1 N N
112 C58 H581 C H sing 1.1 N N
113 C58 H583 C H sing 1.1 N N
114 C58 H582 C H sing 1.1 N N
115 N23 H231 N H sing 1.0 N N
116 N28 H1 N H sing 1.0 N N
117 N35 H351 N H sing 1.0 N N
118 N39 H391 N H sing 1.0 N N