Chemical Components in the PDB

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GK7 : Summary

Code

GK7

One-letter code

X

Molecule name

methyl [(2S)-1-{[(2R,6S,12Z,13aS,14aR,16aS)-2-[(7-methoxy-3-methylquinoxalin-2-yl)oxy]-14a-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl]amino}-3,3-dimethyl-1-oxobutan-2-yl]carbamate

Systematic names

ProgramVersionName
ACDLabs 12.01 methyl [(2S)-1-{[(2R,6S,12Z,13aS,14aR,16aS)-2-[(7-methoxy-3-methylquinoxalin-2-yl)oxy]-14a-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl]amino}-3,3-dimethyl-1-oxobutan-2-yl]carbamate
OpenEye OEToolkits 2.0.6 methyl ~{N}-[(2~{S})-1-[[(1~{S},4~{R},6~{S},7~{Z},14~{S},18~{R})-18-(7-methoxy-3-methyl-quinoxalin-2-yl)oxy-4-[(1-methylcyclopropyl)sulfonylcarbamoyl]-2,15-bis(oxidanylidene)-3,16-diazatricyclo[14.3.0.0^{4,6}]nonadec-7-en-14-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate

Formula

C40 H55 N7 O10 S

Formal charge

0

Molecular weight

825.971 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 12.01 c6(OC1CC2C(=O)NC3(C(C=CCCCCCC(C(N2C1)=O)NC(=O)C(NC(OC)=O)C(C)(C)C)C3)C(NS(C4(CC4)C)(=O)=O)=O)nc5cc(OC)ccc5nc6C
SMILES CACTVS 3.385 COC(=O)N[CH](C(=O)N[CH]1CCCCCC=C[CH]2C[C]2(NC(=O)[CH]3C[CH](CN3C1=O)Oc4nc5cc(OC)ccc5nc4C)C(=O)N[S](=O)(=O)C6(C)CC6)C(C)(C)C
SMILES OpenEye OEToolkits 2.0.6 Cc1c(nc2cc(ccc2n1)OC)OC3CC4C(=O)NC5(CC5C=CCCCCCC(C(=O)N4C3)NC(=O)C(C(C)(C)C)NC(=O)OC)C(=O)NS(=O)(=O)C6(CC6)C
Canonical SMILES CACTVS 3.385 COC(=O)N[C@H](C(=O)N[C@H]1CCCCC\C=C/[C@@H]2C[C@]2(NC(=O)[C@@H]3C[C@H](CN3C1=O)Oc4nc5cc(OC)ccc5nc4C)C(=O)N[S](=O)(=O)C6(C)CC6)C(C)(C)C
Canonical SMILES OpenEye OEToolkits 2.0.6 Cc1c(nc2cc(ccc2n1)OC)O[C@@H]3C[C@H]4C(=O)N[C@@]5(C[C@H]5/C=C\CCCCC[C@@H](C(=O)N4C3)NC(=O)[C@H](C(C)(C)C)NC(=O)OC)C(=O)NS(=O)(=O)C6(CC6)C

IUPAC InChI

InChI=1S/C40H55N7O10S/c1-23-34(43-29-19-25(55-6)15-16-27(29)41-23)57-26-20-30-32(48)45-40(36(51)46-58(53,54)39(5)17-18-39)21-24(40)13-11-9-8-10-12-14-28(35(50)47(30)22-26)42-33(49)31(38(2,3)4)44-37(52)56-7/h11,13,15-16,19,24,26,28,30-31H,8-10,12,14,17-18,20-22H2,1-7H3,(H,42,49)(H,44,52)(H,45,48)(H,46,51)/b13-11-/t24-,26-,28+,30+,31-,40-/m1/s1

IUPAC InChI key

KNHVGXZTFPBTRE-VQPXEURISA-N
GK7

wwPDB Information

Atom count

113 (58 without Hydrogen)

Polymer type

Bound ligand

Type description

NON-POLYMER

Type code

HETAIN

Is modified

No

Standard parent

Not Assigned

Defined at

2018-05-24

Last modified at

2019-12-11

Status

Released

Obsoleted

Not Assigned



GK7 : Atoms of Molecule

Total Number of Atoms: 113
Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -13.788 -15.658 15.401
2 C13 C C2 N N N 0 -12.897 -18.365 16.64
3 C20 C C3 N N N 0 -15.51 -24.613 15.826
4 C21 C C4 N N N 0 -14.488 -25.593 15.197
5 C22 C C5 R N N 0 -12.163 -22.644 14.062
6 C24 C C6 N N N 0 -13.082 -20.819 15.609
7 C26 C C7 N N N 0 -10.937 -23.185 14.831
8 C01 C C8 N N N 0 -15.057 -18.339 17.232
9 C02 C C9 S N N 0 -17.215 -20.495 16.26
10 C03 C C10 N N N 0 -16.389 -22.405 17.763
11 C04 C C11 N N N 0 -15.48 -24.767 17.372
12 C05 C C12 N N N 0 -13.485 -25.181 14.403
13 C06 C C13 S N N 0 -13.281 -23.689 14.084
14 C07 C C14 N N N 0 -12.404 -23.533 12.842
15 C08 C C15 N N N 0 -15.092 -15.453 13.111
16 C09 C C16 N Y N 0 -14.062 -14.897 14.097
17 C12 C C17 R N N 0 -14.112 -17.451 16.914
18 C14 C C18 S N N 0 -13.593 -19.362 15.606
19 C16 C C19 N N N 0 -15.842 -20.474 15.597
20 C18 C C20 N N N 0 -17.479 -21.919 16.75
21 C19 C C21 N N N 0 -16.605 -23.929 18.029
22 C32 C C22 N N N 0 -8.303 -22.089 17.625
23 C33 C C23 N N N 0 -6.844 -22.327 17.997
24 C34 C C24 N N N 0 -7.218 -21.164 17.076
25 C36 C C25 N N N 0 -19.14 -19.029 15.518
26 C38 C C26 S N N 0 -20.259 -18.794 14.501
27 C41 C C27 N Y N 0 -12.118 -13.929 16.066
28 C42 C C28 N Y N 0 -11.087 -13.408 17.092
29 C43 C C29 N Y N 0 -10.339 -12.115 16.784
30 C45 C C30 N N N 0 -9.211 -12.447 18.828
31 C46 C C31 N Y N 0 -10.592 -11.336 15.491
32 C47 C C32 N Y N 0 -11.612 -11.861 14.484
33 C48 C C33 N Y N 0 -12.375 -13.174 14.793
34 C50 C C34 N N N 0 -9.24 -21.503 18.7
35 C51 C C35 N N N 0 -20.066 -17.487 13.722
36 C52 C C36 N N N 0 -22.197 -20.023 15.479
37 C55 C C37 N N N 0 -23.956 -21.284 16.487
38 C56 C C38 N N N 0 -18.713 -17.483 12.965
39 C57 C C39 N N N 0 -20.122 -16.328 14.739
40 C58 C C40 N N N 0 -21.216 -17.358 12.687
41 N15 N N1 N N N 0 -14.834 -19.47 16.053
42 N23 N N2 N N N 0 -12.562 -21.262 14.313
43 N28 N N3 N N N 0 -10.312 -22.489 15.667
44 N35 N N4 N N N 0 -18.263 -20.197 15.307
45 N39 N N5 N N N 0 -21.488 -18.76 15.252
46 N40 N N6 N Y N 0 -12.832 -15.177 16.36
47 N49 N N7 N Y N 0 -13.35 -13.669 13.812
48 O11 O O1 N N N 0 -14.499 -16.836 15.644
49 O17 O O2 N N N 0 -15.598 -21.243 14.745
50 O25 O O3 N N N 0 -13.15 -21.526 16.548
51 O27 O O4 N N N 0 -10.503 -24.471 14.575
52 O30 O O5 N N N 0 -9.402 -24.479 17.078
53 O31 O O6 N N N 0 -7.972 -23.675 15.459
54 O37 O O7 N N N 0 -19.0 -18.322 16.454
55 O44 O O8 N N N 0 -9.418 -11.632 17.704
56 O53 O O9 N N N 0 -21.935 -20.971 14.825
57 O54 O O10 N N N 0 -23.197 -20.089 16.473
58 S29 S S1 N N N 0 -8.984 -23.262 16.41
59 H132 H H1 N N N 0 -12.552 -18.881 17.548
60 H131 H H2 N N N 0 -12.057 -17.817 16.188
61 H201 H H3 N N N 0 -15.245 -23.581 15.554
62 H202 H H4 N N N 0 -16.519 -24.844 15.453
63 H211 H H5 N N N 0 -14.585 -26.648 15.405
64 H011 H H6 N N N 0 -16.062 -17.895 17.181
65 H012 H H7 N N N 0 -14.893 -18.762 18.234
66 H021 H H8 N N N 0 -17.236 -19.794 17.108
67 H032 H H9 N N N 0 -15.388 -22.241 17.338
68 H031 H H10 N N N 0 -16.483 -21.847 18.706
69 H041 H H11 N N N 0 -15.621 -25.827 17.632
70 H042 H H12 N N N 0 -14.506 -24.423 17.75
71 H051 H H13 N N N 0 -12.809 -25.91 13.981
72 H061 H H14 N N N 0 -14.255 -23.203 13.922
73 H071 H H15 N N N 0 -12.825 -23.102 11.922
74 H072 H H16 N N N 0 -11.677 -24.316 12.58
75 H083 H H17 N N N 0 -15.162 -14.787 12.238
76 H082 H H18 N N N 0 -14.781 -16.456 12.783
77 H081 H H19 N N N 0 -16.074 -15.516 13.603
78 H121 H H20 N N N 0 -13.889 -16.709 17.695
79 H141 H H21 N N N 0 -13.526 -18.941 14.592
80 H181 H H22 N N N 0 -18.461 -21.947 17.245
81 H182 H H23 N N N 0 -17.485 -22.597 15.884
82 H191 H H24 N N N 0 -17.575 -24.235 17.609
83 H192 H H25 N N N 0 -16.602 -24.11 19.114
84 H332 H H26 N N N 0 -6.308 -23.198 17.593
85 H331 H H27 N N N 0 -6.498 -22.128 19.022
86 H342 H H28 N N N 0 -6.952 -21.199 16.009
87 H341 H H29 N N N 0 -7.142 -20.128 17.439
88 H381 H H30 N N N 0 -20.274 -19.632 13.789
89 H421 H H31 N N N 0 -10.9 -13.948 18.008
90 H452 H H32 N N N 0 -8.469 -11.978 19.49
91 H453 H H33 N N N 0 -10.16 -12.571 19.371
92 H501 H H37 N N N 0 -8.673 -20.818 19.347
93 H451 H H34 N N N 0 -8.843 -13.432 18.504
94 H461 H H35 N N N 0 -10.053 -10.422 15.293
95 H471 H H36 N N N 0 -11.8 -11.323 13.566
96 H502 H H38 N N N 0 -10.059 -20.953 18.212
97 H503 H H39 N N N 0 -9.658 -22.32 19.307
98 H551 H H40 N N N 0 -24.703 -21.235 17.293
99 H553 H H41 N N N 0 -24.467 -21.405 15.521
100 H552 H H42 N N N 0 -23.288 -22.141 16.658
101 H563 H H43 N N N 0 -17.888 -17.574 13.687
102 H562 H H44 N N N 0 -18.682 -18.331 12.265
103 H561 H H45 N N N 0 -18.609 -16.542 12.406
104 H572 H H46 N N N 0 -19.301 -16.435 15.464
105 H573 H H47 N N N 0 -20.02 -15.37 14.209
106 H571 H H48 N N N 0 -21.085 -16.352 15.27
107 H581 H H49 N N N 0 -22.183 -17.36 13.211
108 H583 H H50 N N N 0 -21.103 -16.417 12.129
109 H582 H H51 N N N 0 -21.177 -18.206 11.988
110 H231 H H52 N N N 0 -12.477 -20.594 13.574
111 H1 H H53 N N N 0 -10.573 -21.548 15.883
112 H351 H H54 N N N 0 -18.393 -20.782 14.506
113 H391 H H55 N N N 0 -21.848 -17.898 15.609



GK7 : Chemical Bonds

Total Number of Bonds: 118
Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C58 C51 C C sing 1.55 N N
2 C07 C22 C C sing 1.53 N N
3 C07 C06 C C sing 1.53 N N
4 C56 C51 C C sing 1.55 N N
5 C08 C09 C C sing 1.53 N N
6 C51 C38 C C sing 1.53 N N
7 C51 C57 C C sing 1.54 N N
8 N49 C09 N C doub 1.45 N Y
9 N49 C48 N C sing 1.47 N Y
10 C22 C06 C C sing 1.53 N N
11 C22 N23 C N sing 1.46 N N
12 C22 C26 C C sing 1.55 N N
13 C06 C05 C C sing 1.54 N N
14 C09 C10 C C sing 1.53 N Y
15 N23 C24 N C sing 1.47 N N
16 C05 C21 C C doub 1.34 Z N
17 C47 C48 C C doub 1.55 N Y
18 C47 C46 C C sing 1.53 N Y
19 C38 N39 C N sing 1.44 N N
20 C38 C36 C C sing 1.53 N N
21 O27 C26 O C doub 1.38 N N
22 O17 C16 O C doub 1.17 N N
23 C48 C41 C C sing 1.5 N Y
24 O53 C52 O C doub 1.18 N N
25 C26 N28 C N sing 1.25 N N
26 C21 C20 C C sing 1.55 N N
27 N39 C52 N C sing 1.47 N N
28 N35 C36 N C sing 1.48 N N
29 N35 C02 N C sing 1.45 N N
30 C10 O11 C O sing 1.4 N N
31 C10 N40 C N doub 1.44 N Y
32 O31 S29 O S doub 1.45 N N
33 C52 O54 C O sing 1.41 N N
34 C46 C43 C C doub 1.53 N Y
35 C36 O37 C O doub 1.18 N N
36 C16 N15 C N sing 1.49 N N
37 C16 C02 C C sing 1.52 N N
38 C14 C24 C C sing 1.54 N N
39 C14 N15 C N sing 1.32 N N
40 C14 C13 C C sing 1.6 N N
41 C24 O25 C O doub 1.18 N N
42 O11 C12 O C sing 1.46 N N
43 N28 S29 N S sing 1.71 N N
44 C20 C04 C C sing 1.55 N N
45 N15 C01 N C sing 1.65 N N
46 C41 N40 C N sing 1.47 N Y
47 C41 C42 C C doub 1.55 N Y
48 C02 C18 C C sing 1.53 N N
49 S29 O30 S O doub 1.45 N N
50 S29 C32 S C sing 1.82 N N
51 O54 C55 O C sing 1.42 N N
52 C13 C12 C C sing 1.54 N N
53 C18 C03 C C sing 1.57 N N
54 C43 C42 C C sing 1.53 N Y
55 C43 O44 C O sing 1.39 N N
56 C12 C01 C C sing 1.34 N N
57 C34 C32 C C sing 1.53 N N
58 C34 C33 C C sing 1.53 N N
59 C04 C19 C C sing 1.55 N N
60 C32 C33 C C sing 1.52 N N
61 C32 C50 C C sing 1.54 N N
62 O44 C45 O C sing 1.4 N N
63 C03 C19 C C sing 1.56 N N
64 C13 H132 C H sing 1.1 N N
65 C13 H131 C H sing 1.1 N N
66 C20 H201 C H sing 1.1 N N
67 C20 H202 C H sing 1.1 N N
68 C21 H211 C H sing 1.08 N N
69 C01 H011 C H sing 1.1 N N
70 C01 H012 C H sing 1.1 N N
71 C02 H021 C H sing 1.1 N N
72 C03 H032 C H sing 1.1 N N
73 C03 H031 C H sing 1.1 N N
74 C04 H041 C H sing 1.1 N N
75 C04 H042 C H sing 1.1 N N
76 C05 H051 C H sing 1.08 N N
77 C06 H061 C H sing 1.1 N N
78 C07 H071 C H sing 1.1 N N
79 C07 H072 C H sing 1.1 N N
80 C08 H083 C H sing 1.1 N N
81 C08 H082 C H sing 1.1 N N
82 C08 H081 C H sing 1.1 N N
83 C12 H121 C H sing 1.1 N N
84 C14 H141 C H sing 1.1 N N
85 C18 H181 C H sing 1.1 N N
86 C18 H182 C H sing 1.1 N N
87 C19 H191 C H sing 1.1 N N
88 C19 H192 C H sing 1.1 N N
89 C33 H332 C H sing 1.1 N N
90 C33 H331 C H sing 1.1 N N
91 C34 H342 C H sing 1.1 N N
92 C34 H341 C H sing 1.1 N N
93 C38 H381 C H sing 1.1 N N
94 C42 H421 C H sing 1.08 N N
95 C45 H452 C H sing 1.1 N N
96 C45 H453 C H sing 1.1 N N
97 C45 H451 C H sing 1.1 N N
98 C46 H461 C H sing 1.08 N N
99 C47 H471 C H sing 1.08 N N
100 C50 H501 C H sing 1.1 N N
101 C50 H502 C H sing 1.1 N N
102 C50 H503 C H sing 1.1 N N
103 C55 H551 C H sing 1.1 N N
104 C55 H553 C H sing 1.1 N N
105 C55 H552 C H sing 1.1 N N
106 C56 H563 C H sing 1.1 N N
107 C56 H562 C H sing 1.1 N N
108 C56 H561 C H sing 1.1 N N
109 C57 H572 C H sing 1.1 N N
110 C57 H573 C H sing 1.1 N N
111 C57 H571 C H sing 1.1 N N
112 C58 H581 C H sing 1.1 N N
113 C58 H583 C H sing 1.1 N N
114 C58 H582 C H sing 1.1 N N
115 N23 H231 N H sing 1.0 N N
116 N28 H1 N H sing 1.0 N N
117 N35 H351 N H sing 1.0 N N
118 N39 H391 N H sing 1.0 N N



GK7 : Used in PDB Entries

Total Number of PDB Entries: 1
Ligand Code PDB Entry ID Type Total Distinct
GK7 6diq Open in New Window Bound ligand 1 1