Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : H3D    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C C4 C C sing 1.54 N N
2 C C1 C C sing 1.55 N N
3 O1 C10 O C sing 1.36 N N
4 O1 C13 O C sing 1.43 N N
5 C11 C10 C C doub 1.39 N Y
6 C11 C12 C C sing 1.38 N Y
7 C4 C3 C C sing 1.54 N N
8 C10 C9 C C sing 1.39 N Y
9 C12 C7 C C doub 1.38 N Y
10 C1 C2 C C sing 1.55 N N
11 C13 C14 C C sing 1.54 N N
12 C9 O2 C O sing 1.36 N N
13 C9 C8 C C doub 1.39 N Y
14 C7 C8 C C sing 1.38 N Y
15 C7 C3 C C sing 1.51 N N
16 C14 O2 C O sing 1.43 N N
17 C3 C2 C C sing 1.54 N N
18 C3 N C N sing 1.47 N N
19 N C5 N C sing 1.35 N N
20 C5 O C O doub 1.21 N N
21 C5 C6 C C sing 1.51 N N
22 C4 H1 C H sing 1.09 N N
23 C4 H2 C H sing 1.09 N N
24 C6 H3 C H sing 1.09 N N
25 C6 H4 C H sing 1.09 N N
26 C6 H5 C H sing 1.09 N N
27 C8 H6 C H sing 1.08 N N
28 C13 H7 C H sing 1.09 N N
29 C13 H8 C H sing 1.09 N N
30 N H9 N H sing 0.97 N N
31 C2 H10 C H sing 1.09 N N
32 C2 H11 C H sing 1.09 N N
33 C1 H12 C H sing 1.09 N N
34 C1 H13 C H sing 1.09 N N
35 C H14 C H sing 1.09 N N
36 C H15 C H sing 1.09 N N
37 C12 H16 C H sing 1.08 N N
38 C11 H17 C H sing 1.08 N N
39 C14 H18 C H sing 1.09 N N
40 C14 H19 C H sing 1.09 N N