Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : KAA    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 NZ CE N C sing 1.46 N N
2 NZ HNZ1 N H sing 1.0 N N
3 NZ HNZ2 N H sing 1.0 N N
4 CE CD C C sing 1.53 N N
5 CE HE1 C H sing 1.09 N N
6 CE HE2 C H sing 1.1 N N
7 CD CG C C sing 1.53 N N
8 CD HD1 C H sing 1.1 N N
9 CD HD2 C H sing 1.1 N N
10 CG CB C C sing 1.53 N N
11 CG HG1 C H sing 1.1 N N
12 CG HG2 C H sing 1.1 N N
13 CB CA C C sing 1.53 N N
14 CB HB1 C H sing 1.1 N N
15 CB HB2 C H sing 1.1 N N
16 CA C C C sing 1.52 N N
17 CA N C N sing 1.46 N N
18 CA HA C H sing 1.1 N N
19 N HN1 N H sing 1.0 N N
20 N HN2 N H sing 0.99 N N
21 C O C O doub 1.23 N N
22 C N8 C N sing 1.43 N N
23 N8 S1 N S sing 1.71 N N
24 N8 HN8 N H sing 1.03 N N
25 S1 O1S S O doub 1.45 N N
26 S1 O5' S O sing 1.64 N N
27 S1 O2S S O doub 1.45 N N
28 O5' C5' O C sing 1.42 N N
29 C5' C4' C C sing 1.52 N N
30 C5' H5'1 C H sing 1.09 N N
31 C5' H5'2 C H sing 1.09 N N
32 C4' O4' C O sing 1.45 N N
33 C4' C3' C C sing 1.53 N N
34 C4' H4' C H sing 1.09 N N
35 O4' C1' O C sing 1.44 N N
36 C3' C2' C C sing 1.52 N N
37 C3' O3' C O sing 1.43 N N
38 C3' H3' C H sing 1.09 N N
39 O3' HO3' O H sing 0.97 N N
40 C2' C1' C C sing 1.52 N N
41 C2' O2' C O sing 1.41 N N
42 C2' H2' C H sing 1.1 N N
43 O2' HO2' O H sing 0.97 N N
44 C1' N9 C N sing 1.46 N N
45 C1' H1' C H sing 1.1 N N
46 N9 C4 N C sing 1.37 N Y
47 N9 C8 N C sing 1.37 N Y
48 C8 N7 C N doub 1.32 N Y
49 C8 H8 C H sing 1.08 N N
50 N7 C5 N C sing 1.37 N Y
51 C5 C6 C C sing 1.39 N Y
52 C5 C4 C C doub 1.39 N Y
53 C4 N3 C N sing 1.34 N Y
54 N3 C2 N C doub 1.35 N Y
55 C2 N1 C N sing 1.36 N Y
56 C2 H2 C H sing 1.08 N N
57 N1 C6 N C doub 1.36 N Y
58 C6 N6 C N sing 1.41 N N
59 N6 HN61 N H sing 1.0 N N
60 N6 HN62 N H sing 1.0 N N