Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P5G    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C16 O4 C O sing 1.43 N N
2 O4 C15 O C sing 1.36 N N
3 C15 C17 C C doub 1.39 N Y
4 C15 C14 C C sing 1.39 N Y
5 O3 C14 O C sing 1.36 N N
6 C17 C11 C C sing 1.38 N Y
7 C14 C13 C C doub 1.39 N Y
8 C11 C10 C C sing 1.51 N N
9 C11 C12 C C doub 1.38 N Y
10 C13 C12 C C sing 1.38 N Y
11 C10 C9 C C sing 1.53 N N
12 C7 O2 C O sing 1.44 N N
13 C7 C6 C C sing 1.54 N N
14 O2 C8 O C sing 1.45 N N
15 C9 C6 C C sing 1.55 N N
16 C9 C8 C C sing 1.54 N N
17 C6 C5 C C sing 1.53 N N
18 C1 O1 C O sing 1.43 N N
19 C5 C4 C C sing 1.51 N N
20 C3 C4 C C doub 1.38 N Y
21 C3 C2 C C sing 1.39 N Y
22 O1 C2 O C sing 1.36 N N
23 C4 C18 C C sing 1.38 N Y
24 C2 C20 C C doub 1.39 N Y
25 C18 C19 C C doub 1.38 N Y
26 C20 O5 C O sing 1.36 N N
27 C20 C19 C C sing 1.39 N Y
28 C5 H52 C H sing 1.09 N N
29 C5 H51 C H sing 1.09 N N
30 C6 H6 C H sing 1.09 N N
31 C7 H72 C H sing 1.09 N N
32 C7 H71 C H sing 1.09 N N
33 C8 H81 C H sing 1.09 N N
34 C8 H82 C H sing 1.09 N N
35 C10 H9L C H sing 1.09 N N
36 C10 H10 C H sing 1.09 N N
37 C13 H9N C H sing 1.08 N N
38 C17 H17 C H sing 1.08 N N
39 C1 H12 C H sing 1.09 N N
40 C1 H13 C H sing 1.09 N N
41 C1 H11 C H sing 1.09 N N
42 C12 H9M C H sing 1.08 N N
43 C16 H16 C H sing 1.09 N N
44 C16 H9O C H sing 1.09 N N
45 C16 H9P C H sing 1.09 N N
46 C18 H18 C H sing 1.08 N N
47 C19 H19 C H sing 1.08 N N
48 C3 H31 C H sing 1.08 N N
49 C9 H9 C H sing 1.09 N N
50 O3 H32 O H sing 0.97 N N
51 O5 H53 O H sing 0.97 N N