Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : X9D    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O24 C23 O C doub 1.22 N N
2 O18 C17 O C doub 1.21 N N
3 C23 O25 C O sing 1.35 N N
4 C23 C10 C C sing 1.39 N N
5 O27 C26 O C sing 1.36 N N
6 C29 C28 C C sing 1.51 N N
7 C10 N09 C N sing 1.33 N N
8 C10 C11 C C sing 1.51 N N
9 N09 C08 N C doub 1.32 N N
10 C17 N16 C N sing 1.35 N N
11 C17 C12 C C sing 1.51 N N
12 C26 C28 C C doub 1.36 N Y
13 C26 C07 C C sing 1.42 N Y
14 N16 C15 N C sing 1.4 N N
15 C28 N30 C N sing 1.36 N Y
16 C11 C12 C C sing 1.53 N N
17 C12 O13 C O sing 1.43 N N
18 C12 C14 C C sing 1.51 N N
19 C07 C08 C C sing 1.41 N N
20 C07 C06 C C doub 1.41 N Y
21 N30 C31 N C doub 1.36 N Y
22 C15 C14 C C doub 1.39 N Y
23 C15 C19 C C sing 1.39 N Y
24 C14 C22 C C sing 1.38 N Y
25 C06 C31 C C sing 1.35 N Y
26 C06 C05 C C sing 1.51 N N
27 C19 C20 C C doub 1.38 N Y
28 O04 C05 O C sing 1.43 N N
29 O04 P02 O P sing 1.61 N N
30 O03 P02 O P doub 1.48 N N
31 C22 C21 C C doub 1.38 N Y
32 O01 P02 O P sing 1.61 N N
33 P02 O32 P O sing 1.61 N N
34 C20 C21 C C sing 1.38 N Y
35 C05 H051 C H sing 1.09 N N
36 C05 H052 C H sing 1.09 N N
37 C08 H081 C H sing 1.08 N N
38 C11 H111 C H sing 1.09 N N
39 C11 H112 C H sing 1.09 N N
40 C19 H191 C H sing 1.08 N N
41 C20 H201 C H sing 1.08 N N
42 C21 H211 C H sing 1.08 N N
43 C22 H221 C H sing 1.08 N N
44 C29 H292 C H sing 1.09 N N
45 C29 H293 C H sing 1.09 N N
46 C29 H291 C H sing 1.09 N N
47 C31 H311 C H sing 1.08 N N
48 N09 H091 N H sing 0.97 N N
49 N16 H161 N H sing 0.97 N N
50 O01 H4 O H sing 0.97 N N
51 O13 H131 O H sing 0.97 N N
52 O25 H5 O H sing 0.97 N N
53 O32 H7 O H sing 0.97 N N
54 N30 H301 N H sing 0.97 N N