Chemical Components in the PDB

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PEJ : Summary

Code

PEJ

One-letter code

X

Molecule name

PERIODATE

Systematic names

ProgramVersionName
ACDLabs 10.04 periodate
OpenEye OEToolkits 2.0.7 periodate

Formula

I O4

Formal charge

-1

Molecular weight

190.902 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 [O-]I(=O)(=O)=O
SMILES CACTVS 3.385 [O-][I](=O)(=O)=O
SMILES OpenEye OEToolkits 2.0.7 [O-]I(=O)(=O)=O
Canonical SMILES CACTVS 3.385 [O-][I](=O)(=O)=O
Canonical SMILES OpenEye OEToolkits 2.0.7 [O-]I(=O)(=O)=O

IUPAC InChI

InChI=1S/HIO4/c2-1(3,4)5/h(H,2,3,4,5)/p-1

IUPAC InChI key

KHIWWQKSHDUIBK-UHFFFAOYSA-M
PEJ

wwPDB Information

Atom count

5 (5 without Hydrogen)

Polymer type

Bound ligand

Type description

NON-POLYMER

Type code

HETAIN

Is modified

No

Standard parent

Not Assigned

Defined at

2004-06-04

Last modified at

2023-09-23

Status

Released

Obsoleted

Not Assigned



PEJ : Atoms of Molecule

Total Number of Atoms: 5
Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 I I I N N N 0 0.0 0.0 0.0
2 O1 O O1 N N N -1 0.0 -1.443 -1.021
3 O2 O O2 N N N 0 0.0 1.443 -1.021
4 O3 O O3 N N N 0 -1.443 0.0 1.02
5 O4 O O4 N N N 0 1.443 0.0 1.021



PEJ : Chemical Bonds

Total Number of Bonds: 4
Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 I O1 I O sing 1.77 N N
2 I O2 I O doub 1.77 N N
3 I O3 I O doub 1.77 N N
4 I O4 I O doub 1.77 N N



PEJ : Used in PDB Entries

Total Number of PDB Entries: 1
Ligand Code PDB Entry ID Type Total Distinct
PEJ 1tb4 Open in New Window Bound ligand 1 1