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A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION

X-ray diffraction
1.97Å resolution
PDB entry 198d coloured by chain, front view.
PDB entry 198d coloured by chain, side view.
PDB entry 198d coloured by chain, top view.
Source organism: Synthetic construct
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct DNA molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: DNA
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Multimeric state: homo dimer
Accessible surface area: 2294.16 Å2
Buried surface area: 2863.49 Å2
Dissociation area: 745.65 Å2
Dissociation energy (ΔGdiss): -0.75 kcal/mol
Dissociation entropy (TΔSdiss): 8.07 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-113376
Assembly 2
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Assembly Name: DNA
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Multimeric state: homo dimer
Accessible surface area: 2232.64 Å2
Buried surface area: 2427.41 Å2
Dissociation area: 713.79 Å2
Dissociation energy (ΔGdiss): 0.45 kcal/mol
Dissociation entropy (TΔSdiss): 7.99 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-113376

Macromolecules

DNA chains A, B, C, D
Name: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
Representative chains: A, B, C, D
Source organism: Synthetic construct [32630]
Expression system: Not provided
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') in PDB entry 198d, assembly 1, front view.
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') in PDB entry 198d, assembly 1, side view.
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') in PDB entry 198d, assembly 1, top view.
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