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Methods used in the structure determination of foot-and-mouth disease virus.

Fry E, Acharya R, Stuart D
Acta Crystallogr A 49 ( Pt 1) 45-55 (1993)
Cited: 28 times
EuropePMC logo PMID: 8382928

Abstract

The structure of foot-and-mouth disease virus (FMDV) strain O1 BFS 1860 has been determined to 2.9 A resolution using the molecular-replacement method [Acharya, Fry, Stuart, Fox, Rowlands & Brown (1989). Nature (London), 337, 709-716]. Crystals of the virus with average dimensions 0.12 x 0.06 x 0.12 mm belong to space group I23, a = 345 A with 1/12 of the icosahedral particle per asymmetric unit giving fivefold noncrystallographic redundancy. Oscillation diffraction photographs were collected at the SERC Synchrotron Radiation Source at Daresbury in accordance with strict disease security regulations. The ambiguity in particle orientation was resolved using a self-rotation function and starting estimates of the phases to 8 A were derived from the known structures of two picornaviruses similarly oriented in the I23 unit cell. The phases were refined and extended using iterative averaging and solvent flattening with the implementation of a simple automatic envelope-determination procedure to increase the phasing power available.

Reviews - 1bbt mentioned but not cited (1)

  1. The pH stability of foot-and-mouth disease virus. Yuan H, Li P, Ma X, Lu Z, Sun P, Bai X, Zhang J, Bao H, Cao Y, Li D, Fu Y, Chen Y, Bai Q, Zhang J, Liu Z. Virol J 14 233 (2017)

Articles - 1bbt mentioned but not cited (15)

  1. The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution. Simpson AA, Chipman PR, Baker TS, Tijssen P, Rossmann MG. Structure 6 1355-1367 (1998)
  2. Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design. Kotecha A, Seago J, Scott K, Burman A, Loureiro S, Ren J, Porta C, Ginn HM, Jackson T, Perez-Martin E, Siebert CA, Paul G, Huiskonen JT, Jones IM, Esnouf RM, Fry EE, Maree FF, Charleston B, Stuart DI. Nat Struct Mol Biol 22 788-794 (2015)
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  4. Rules of engagement between αvβ6 integrin and foot-and-mouth disease virus. Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI. Nat Commun 8 15408 (2017)
  5. Interaction of alphaVbeta3 and alphaVbeta6 integrins with human parechovirus 1. Seitsonen J, Susi P, Heikkilä O, Sinkovits RS, Laurinmäki P, Hyypiä T, Butcher SJ. J Virol 84 8509-8519 (2010)
  6. Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies. Shakeel S, Westerhuis BM, Ora A, Koen G, Bakker AQ, Claassen Y, Wagner K, Beaumont T, Wolthers KC, Butcher SJ. J Virol 89 9571-9580 (2015)
  7. Tracking the Antigenic Evolution of Foot-and-Mouth Disease Virus. Reeve R, Borley DW, Maree FF, Upadhyaya S, Lukhwareni A, Esterhuysen JJ, Harvey WT, Blignaut B, Fry EE, Parida S, Paton DJ, Mahapatra M. PLoS One 11 e0159360 (2016)
  8. Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization. He Y, Li K, Cao Y, Sun Z, Li P, Bao H, Wang S, Zhu G, Bai X, Sun P, Liu X, Yang C, Liu Z, Lu Z, Rao Z, Lou Z. PLoS Pathog 17 e1009507 (2021)
  9. Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods. Gibrat JF, Mariadassou M, Boudinot P, Delmas B. BMC Evol Biol 13 154 (2013)
  10. Adaption of FMDV Asia-1 to Suspension Culture: Cell Resistance Is Overcome by Virus Capsid Alterations. Dill V, Hoffmann B, Zimmer A, Beer M, Eschbaumer M. Viruses 9 E231 (2017)
  11. Recovery of data from perfectly twinned virus crystals revisited. Ginn HM, Stuart DI. Acta Crystallogr D Struct Biol 72 817-822 (2016)
  12. Optimized Adenoviral Vector That Enhances the Assembly of FMDV O1 Virus-Like Particles in situ Increases Its Potential as Vaccine for Serotype O Viruses. Ziraldo M, Bidart JE, Prato CA, Tribulatti MV, Zamorano P, Mattion N, D'Antuono AL. Front Microbiol 11 591019 (2020)
  13. Two Cross-Protective Antigen Sites on Foot-and-Mouth Disease Virus Serotype O Structurally Revealed by Broadly Neutralizing Antibodies from Cattle. Li K, He Y, Wang L, Li P, Wang S, Sun P, Bao H, Cao Y, Liu X, Zhu G, Song Y, Bai X, Ma X, Fu Y, Yuan H, Zhang J, Wang J, Chen Y, Li D, Lou Z, Liu Z, Lu Z. J Virol 95 e0088121 (2021)
  14. Conserved antigen structures and antibody-driven variations on foot-and-mouth disease virus serotype A revealed by bovine neutralizing monoclonal antibodies. Li K, He Y, Wang L, Li P, Bao H, Huang S, Zhou S, Zhu G, Song Y, Li Y, Wang S, Zhang Q, Sun P, Bai X, Zhao Z, Lou Z, Cao Y, Lu Z, Liu Z. PLoS Pathog 19 e1011811 (2023)
  15. Statistical approach for lysosomal membrane proteins (LMPs) identification. Tripathi V, Tripathi P, Gupta D. Syst Synth Biol 8 313-319 (2014)


Reviews citing this publication (2)

  1. Insights into virus capsid assembly from non-covalent mass spectrometry. Morton VL, Stockley PG, Stonehouse NJ, Ashcroft AE. Mass Spectrom Rev 27 575-595 (2008)
  2. Virus crystallography. Fry EE, Grimes J, Stuart DI. Mol Biotechnol 12 13-23 (1999)

Articles citing this publication (10)

  1. Structure of a major immunogenic site on foot-and-mouth disease virus. Logan D, Abu-Ghazaleh R, Blakemore W, Curry S, Jackson T, King A, Lea S, Lewis R, Newman J, Parry N. Nature 362 566-568 (1993)
  2. The structure and antigenicity of a type C foot-and-mouth disease virus. Lea S, Hernández J, Blakemore W, Brocchi E, Curry S, Domingo E, Fry E, Abu-Ghazaleh R, King A, Newman J. Structure 2 123-139 (1994)
  3. Dissecting the roles of VP0 cleavage and RNA packaging in picornavirus capsid stabilization: the structure of empty capsids of foot-and-mouth disease virus. Curry S, Fry E, Blakemore W, Abu-Ghazaleh R, Jackson T, King A, Lea S, Newman J, Stuart D. J Virol 71 9743-9752 (1997)
  4. Perturbations in the surface structure of A22 Iraq foot-and-mouth disease virus accompanying coupled changes in host cell specificity and antigenicity. Curry S, Fry E, Blakemore W, Abu-Ghazaleh R, Jackson T, King A, Lea S, Newman J, Rowlands D, Stuart D. Structure 4 135-145 (1996)
  5. Structural comparison of two strains of foot-and-mouth disease virus subtype O1 and a laboratory antigenic variant, G67. Lea S, Abu-Ghazaleh R, Blakemore W, Curry S, Fry E, Jackson T, King A, Logan D, Newman J, Stuart D. Structure 3 571-580 (1995)
  6. Crystal structure of Swine vesicular disease virus and implications for host adaptation. Fry EE, Knowles NJ, Newman JW, Wilsden G, Rao Z, King AM, Stuart DI. J Virol 77 5475-5486 (2003)
  7. Correcting for the ewald sphere in high-resolution single-particle reconstructions. Leong PA, Yu X, Zhou ZH, Jensen GJ. Methods Enzymol 482 369-380 (2010)
  8. Practical modeling of molecular systems with symmetries. Grudinin S, Redon S. J Comput Chem 31 1799-1814 (2010)
  9. Structure and dynamics of the GH loop of the foot-and-mouth disease virus capsid. Azuma H, Yoneda S. J Mol Graph Model 28 278-286 (2009)
  10. Application of the phase extension method in virus crystallography. Reddy VS. Crystallogr Rev 22 128-140 (2016)


Related citations provided by authors (8)

  1. The Three-Dimensional Structure of Foot-and-Mouth Disease Virus. Acharya R, Fry E, Logan D, Stuart D, Brown F, Fox G, Rowlands D New Aspects of Positive-Strand RNA Viruses 211- (1990)
  2. Architecture and Topography of an Aphthovirus. Fry E, Logan D, Acharya R, Fox G, Rowlands D, Brown F, Stuart D Semin. Virol. 1 439- (1990)
  3. Structural and Serological Evidence for a Novel Mechanism of Antigenic Variation in Foot-and-Mouth Disease Virus. Parry N, Fox G, Rowlands D, Brown F, Fry E, Acharya R, Logan D, Stuart D Nature 347 569- (1990)
  4. Structure of Foot-and-Mouth Disease Virus. Acharya R, Fry E, Logan D, Stuart DI, Fox G, Rowlands D, Brown F Use of X-Ray Crystallography in the Design of Antiviral Agents 161- (1990)
  5. The Structure of Foot-and-Mouth Disease Virus: Implications for its Physical and Biological Properties. Acharya R, Fry E, Stuart D, Fox G, Rowlands D, Brown F Vet. Microbiol. 23 21- (1990)
  6. The Three-Dimensional Structure of Foot-and-Mouth Disease Virus at 2.9 Angstroms Resolution. Acharya R, Fry E, Stuart D, Fox G, Rowlands D, Brown F Nature 337 709- (1989)
  7. Implications of the Three-Dimensional Structure of Foot-and-Mouth Disease Virus for its Antigenicity and Cell Attachment. Acharya R, Fry E, Stuart D, Fox G, Rowlands D, Brown F Vaccines 89: Modern Approaches to New Vaccines Including Prevention of Aids 1- (1989)
  8. Crystallization and Preliminary X-Ray Diffraction Analysis of Foot-and-Mouth Disease Virus. Fox G, Stuart D, Acharya KR, Fry E, Rowlands D, Brown F J. Mol. Biol. 196 591- (1987)

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